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nprcgenekeepr  

Genetic Tools for Colony Management
View on CRAN: Click here


Download and install nprcgenekeepr package within the R console
Install from CRAN:
install.packages("nprcgenekeepr")

Install from Github:
library("remotes")
install_github("cran/nprcgenekeepr")

Install by package version:
library("remotes")
install_version("nprcgenekeepr", "2.0.0")



Attach the package and use:
library("nprcgenekeepr")
Maintained by
R. Mark Sharp
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-06-02
Latest Update:
Description:
Provides genetic tools for colony management and is a derivation of the work in Amanda Vinson and Michael J Raboin (2015) <https://pmc.ncbi.nlm.nih.gov/articles/PMC4671785/> "A Practical Approach for Designing Breeding Groups to Maximize Genetic Diversity in a Large Colony of Captive Rhesus Macaques ('Macaca' 'mulatto')". It provides a 'Shiny' application with an exposed API. The application supports five groups of functions: (1) Quality control of studbooks contained in text files or 'Excel' workbooks and of pedigrees within 'LabKey' Electronic Health Records (EHR); (2) Creation of pedigrees from a list of animals using the 'LabKey' EHR integration; (3) Creation and display of an age by sex pyramid plot of the living animals within the designated pedigree; (4) Generation of genetic value analysis reports; and (5) Creation of potential breeding groups with and without proscribed sex ratios and defined maximum kinships.
How to cite:
R. Mark Sharp (2020). nprcgenekeepr: Genetic Tools for Colony Management. R package version 2.0.0, https://cran.r-project.org/web/packages/nprcgenekeepr. Accessed 13 Oct. 2026.
Previous versions and publish date:
(2026-07-09 06:25), 1.0.3 (2020-06-02 14:40), 1.0.5 (2021-03-31 07:10), 1.0.7 (2025-04-24 19:20), 1.0.8 (2025-07-26 06:00)
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