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noia
View on CRAN: Click
here
Download and install noia package within the R console
Install from CRAN:
install.packages("noia")
Install from Github:
library("remotes")
install_github("cran/noia")
Install by package version:
library("remotes")
install_version("noia", "0.97.3")
Attach the package and use:
library("noia")
Maintained by
Arnaud Le Rouzic
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2008-04-27
Latest Update: 2023-03-08
Description:
The NOIA model, as described extensively in Alvarez-Castro & Carlborg (2007), is a framework facilitating the estimation of genetic effects and genotype-to-phenotype maps. This package provides the basic tools to perform linear and multilinear regressions from real populations (provided the phenotype and the genotype of every individuals), estimating the genetic effects from different reference points, the genotypic values, and the decomposition of genetic variances in a multi-locus, 2 alleles system. This package is presented in Le Rouzic & Alvarez-Castro (2008).
How to cite:
Arnaud Le Rouzic (2008). noia: Implementation of the Natural and Orthogonal InterAction (NOIA) Model. R package version 0.97.3, https://cran.r-project.org/web/packages/noia. Accessed 21 Nov. 2024.
Previous versions and publish date:
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Other R packages that noia depends,
imports, suggests or enhances
Complete documentation for noia
Functions, R codes and Examples using
the noia R package
Some associated functions: A_noia-package . B_geneticRegression . C_GPmapanalysis . GPmap . effectsNames . geneticEffects . genotypesNames . marginallocus . plotNoia . printNoia . simulatePop . varianceDecomposition .
Some associated R codes: GPmap.R . Sloc.R . Z2freq.R . barplot.noia.gpmap.R . bilinearStep.R . checkgenZ.R . drawGenotype.R . effNames.R . effectsNamesGeneral.R . effectsNamesMultilinear.R . effectsPvalues.R . effectsSelect.R . effectsStdErr.R . effectsVariances.R . formulaMultilinear.R . freqmat2Sgenofreq.R . freqmat2Sgenofreqloc.R . gen2Z.R . gen2genZ.R . genNames.R . genNamesAppend.R . genZ2S.R . genZ2X.R . genZ2Z.R . genZ2ZS.R . genZ2freq.R . geneticEffects.R . image.noia.marloc.R . isolateLoc.R . lGPaextract.R . linearGPmapanalysis.R . linearRegression.R . marginallocus.R . multilinearRegression.R . partialX.R . plot.noia.linear.R . plot.noia.marloc.R . plotlocus.R . plottwoloci.R . prepareRegression.R . preparelinearGPmap.R . print.noia.common.R . print.noia.linear.R . print.noia.linear.gpmap.R . print.noia.multilinear.R . print.noia.vardec.R . recomputeG.R . reconstructLinearEffects.R . simulatePop.R . startingValues.R . startingValuesLinear.R . startingValuesMultilinear.R . startingValuesNothing.R . startingValuesReg.R . statusMaxDom.R . statusMaxLevel.R . varianceDecomposition.R . Full noia package functions and examples
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