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nodeSub  

Simulate DNA Alignments Using Node Substitutions
View on CRAN: Click here


Download and install nodeSub package within the R console
Install from CRAN:
install.packages("nodeSub")

Install from Github:
library("remotes")
install_github("cran/nodeSub")

Install by package version:
library("remotes")
install_version("nodeSub", "1.2.8")



Attach the package and use:
library("nodeSub")
Maintained by
Thijs Janzen
[Scholar Profile | Author Map]
First Published: 2021-09-30
Latest Update: 2023-11-14
Description:
Simulate DNA sequences for the node substitution model. In the node substitution model, substitutions accumulate additionally during a speciation event, providing a potential mechanistic explanation for substitution rate variation. This package provides tools to simulate such a process, simulate a reference process with only substitutions along the branches, and provides tools to infer phylogenies from alignments. More information can be found in Janzen (2021) .
How to cite:
Thijs Janzen (2021). nodeSub: Simulate DNA Alignments Using Node Substitutions. R package version 1.2.8, https://cran.r-project.org/web/packages/nodeSub. Accessed 06 Apr. 2025.
Previous versions and publish date:
1.2.2 (2022-01-11 11:22), 1.2.3 (2022-02-01 08:50), 1.2.4 (2022-05-24 12:10), 1.2.5 (2022-08-19 14:30), 1.2.7 (2023-09-15 09:50), 1.2 (2021-09-30 10:30)
Other packages that cited nodeSub R package
View nodeSub citation profile
Other R packages that nodeSub depends, imports, suggests or enhances
Complete documentation for nodeSub
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