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nimbleSCR  

Spatial Capture-Recapture (SCR) Methods Using 'nimble'
View on CRAN: Click here


Download and install nimbleSCR package within the R console
Install from CRAN:
install.packages("nimbleSCR")

Install from Github:
library("remotes")
install_github("cran/nimbleSCR")

Install by package version:
library("remotes")
install_version("nimbleSCR", "0.2.1")



Attach the package and use:
library("nimbleSCR")
Maintained by
Daniel Turek
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-08-20
Latest Update: 2022-11-30
Description:
Provides utility functions, distributions, and fitting methods for Bayesian Spatial Capture-Recapture (SCR) and Open Population Spatial Capture-Recapture (OPSCR) modelling using the nimble package (de Valpine et al. 2017 ). Development of the package was motivated primarily by the need for flexible and efficient analysis of large-scale SCR data (Bischof et al. 2020 ). Computational methods and techniques implemented in nimbleSCR include those discussed in Turek et al. 2021 ; among others. For a recent application of nimbleSCR, see Milleret et al. (2021) .
How to cite:
Daniel Turek (2020). nimbleSCR: Spatial Capture-Recapture (SCR) Methods Using 'nimble'. R package version 0.2.1, https://cran.r-project.org/web/packages/nimbleSCR
Previous versions and publish date:
0.1.0 (2020-08-20 11:20), 0.1.1 (2021-01-07 21:30), 0.1.2 (2021-07-01 22:20), 0.1.3 (2021-10-25 17:50), 0.2.0 (2022-09-02 12:40)
Other packages that cited nimbleSCR R package
View nimbleSCR citation profile
Other R packages that nimbleSCR depends, imports, suggests or enhances
Functions, R codes and Examples using the nimbleSCR R package
Some associated functions: calcWindowSizes . calculateDensity . dDispersal_exp . dHabitatMask . dbernppAC . dbernppACmovement_exp . dbernppACmovement_normal . dbernppDetection_normal . dbernppLocalACmovement_exp . dbernppLocalACmovement_normal . dbernppLocalDetection_normal . dbinomLocal_exp . dbinomLocal_normal . dbinomLocal_normalPlateau . dbinom_vector . dcatState1Alive1Dead . dcatState1Alive2Dead . dcatState2Alive2Dead . dmultiLocal_normal . dnormalizer . dpoisLocal_normal . dpoisppAC . dpoisppDetection_normal . dpoisppLocalDetection_normal . getHomeRangeArea . getLocalObjects . getMidPointNodes . getSparseY . getWindowCoords . getWindowIndex . integrateIntensityLocal_exp . integrateIntensityLocal_normal . integrateIntensity_exp . integrateIntensity_normal . localTrapCalculations . makeConstantNimbleFunction . marginalVoidProbIntegrand . marginalVoidProbNumIntegration . sampler_categorical_general . scaleCoordsToHabitatGrid . stratRejectionSampler_exp . stratRejectionSampler_normal . 
Some associated R codes: calcWindowSizes.R . calculateDensity.R . dDispersal_exp.R . dHabitatMask.R . dbernppAC.R . dbernppACmovement_exp.R . dbernppACmovement_normal.R . dbernppDetection_normal.R . dbernppLocalACmovement_exp.R . dbernppLocalACmovement_normal.R . dbernppLocalDetection_normal.R . dbinomLocal_exp.R . dbinomLocal_normal.R . dbinomLocal_normalPlateau.R . dbinom_vector.R . dcatState1Alive1Dead.R . dcatState1Alive2Dead.R . dcatState2Alive2Dead.R . dmultiLocal_normal.R . dnormalizer.R . dpoisLocal_normal.R . dpoisppAC.R . dpoisppDetection_normal.R . dpoisppLocalDetection_normal.R . getHomeRangeArea.R . getLocalObjects.R . getMidPointNodes.R . getSparseY.R . getWindowCoords.R . getWindowIndex.R . integrateIntensityLocal_exp.R . integrateIntensityLocal_normal.R . integrateIntensity_exp.R . integrateIntensity_normal.R . localTrapCalculations.R . makeConstantNimbleFunction.R . marginalVoidProbIntegrand.R . marginalVoidProbNumIntegration.R . sampler_categorical_general.R . scaleCoordsToHabitatGrid.R . stratRejectionSampler_exp.R . stratRejectionSampler_normal.R . zzz.R .  Full nimbleSCR package functions and examples
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