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nichevol
View on CRAN: Click
here
Download and install nichevol package within the R console
Install from CRAN:
install.packages("nichevol")
Install from Github:
library("remotes")
install_github("cran/nichevol") Install by package version:
library("remotes")
install_version("nichevol", "0.1.20") Attach the package and use:
library("nichevol")
Maintained by
Marlon E. Cobos
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-03-02
Latest Update: 2023-03-10
Description:
A collection of tools that allow users to perform critical steps
in the process of assessing ecological niche evolution over phylogenies, with
uncertainty incorporated explicitly in reconstructions. The method proposed
here for ancestral reconstruction of ecological niches characterizes species'
niches using a bin-based approach that incorporates uncertainty in estimations.
Compared to other existing methods, the approaches presented here reduce risk
of overestimation of amounts and rates of ecological niche evolution. The
main analyses include: initial exploration of environmental data in occurrence
records and accessible areas, preparation of data for phylogenetic analyses,
executing comparative phylogenetic analyses of ecological niches, and plotting
for interpretations. Details on the theoretical background and methods used
can be found in: Owens et al. (2020) ,
Peterson et al. (1999) ,
Sober
How to cite:
Marlon E. Cobos (2020). nichevol: Tools for Ecological Niche Evolution Assessment Considering Uncertainty. R package version 0.1.20, https://cran.r-project.org/web/packages/nichevol. Accessed 04 Jun. 2026.
Previous versions and publish date:
0.1.19 (2020-03-02 12:00)
Other packages that cited nichevol R package
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Other R packages that nichevol depends,
imports, suggests or enhances
Complete documentation for nichevol
Functions, R codes and Examples using
the nichevol R package
Some associated functions: bin_env . bin_ml_rec . bin_par_rec . bin_table . bin_tables . bin_tables0 . character_table . hist_evalues . histograms_env . m . map_nichevol . niche_bars . niche_labels . niche_legend . nichevol . nichevol_bars . nichevol_labels . nichevol_legend . occ_list . par_rec_table . pdf_histograms . read_bin_table . rename_tips . score_tip . score_tree . set_uncertainty . sig_sq . smooth_rec . stats_eval . stats_evalues . temp . tree . tree5 . tree_data .
Some associated R codes: bin_ml_rec.R . bin_par_rec.R . bin_table.R . bin_tables.R . bin_tables0.R . data_doc.R . globals.R . helpers.R . hist_evalues.R . histograms_env.R . map_nichevol.R . niche_bars.R . niche_diffbars.R . nichevol.R . plotting_helpers.R . read_bin_table.R . set_uncertainty.R . smooth_rec.R . stats_eval.R . stats_evalues.R . Full nichevol package functions and examples
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