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nicheROVER  

Niche Region and Niche Overlap Metrics for Multidimensional Ecological Niches
View on CRAN: Click here


Download and install nicheROVER package within the R console
Install from CRAN:
install.packages("nicheROVER")

Install from Github:
library("remotes")
install_github("cran/nicheROVER")

Install by package version:
library("remotes")
install_version("nicheROVER", "1.1.2")



Attach the package and use:
library("nicheROVER")
Maintained by
Martin Lysy
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2014-07-25
Latest Update: 2023-10-13
Description:
Implementation of a probabilistic method to calculate 'nicheROVER' (_niche_ _r_egion and niche _over_lap) metrics using multidimensional niche indicator data (e.g., stable isotopes, environmental variables, etc.). The niche region is defined as the joint probability density function of the multidimensional niche indicators at a user-defined probability alpha (e.g., 95%). Uncertainty is accounted for in a Bayesian framework, and the method can be extended to three or more indicator dimensions. It provides directional estimates of niche overlap, accounts for species-specific distributions in multivariate niche space, and produces unique and consistent bivariate projections of the multivariate niche region. The article by Swanson et al. (2015) provides a detailed description of the methodology. See the package vignette for a worked example using fish stable isotope data.
How to cite:
Martin Lysy (2014). nicheROVER: Niche Region and Niche Overlap Metrics for Multidimensional Ecological Niches. R package version 1.1.2, https://cran.r-project.org/web/packages/nicheROVER. Accessed 22 Dec. 2024.
Previous versions and publish date:
1.0 (2014-07-25 21:16), 1.1.0 (2021-06-03 20:10)
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