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nicheROVER
View on CRAN: Click
here
Download and install nicheROVER package within the R console
Install from CRAN:
install.packages("nicheROVER")
Install from Github:
library("remotes")
install_github("cran/nicheROVER")
Install by package version:
library("remotes")
install_version("nicheROVER", "1.1.2")
Attach the package and use:
library("nicheROVER")
Maintained by
Martin Lysy
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2014-07-25
Latest Update: 2023-10-13
Description:
Implementation of a probabilistic method to calculate 'nicheROVER' (_niche_ _r_egion and niche _over_lap) metrics using multidimensional niche indicator data (e.g., stable isotopes, environmental variables, etc.). The niche region is defined as the joint probability density function of the multidimensional niche indicators at a user-defined probability alpha (e.g., 95%). Uncertainty is accounted for in a Bayesian framework, and the method can be extended to three or more indicator dimensions. It provides directional estimates of niche overlap, accounts for species-specific distributions in multivariate niche space, and produces unique and consistent bivariate projections of the multivariate niche region. The article by Swanson et al. (2015) provides a detailed description of the methodology. See the package vignette for a worked example using fish stable isotope data.
How to cite:
Martin Lysy (2014). nicheROVER: Niche Region and Niche Overlap Metrics for Multidimensional Ecological Niches. R package version 1.1.2, https://cran.r-project.org/web/packages/nicheROVER. Accessed 22 Dec. 2024.
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imports, suggests or enhances
Complete documentation for nicheROVER
Functions, R codes and Examples using
the nicheROVER R package
Some associated functions: ellipse . fish . niche.par.plot . niche.plot . niche.runif . niche.size . nicheROVER-package . niiw.post . niw.coeffs . niw.mom . niw.post . overlap . overlap.plot . overlap.unif . rniw . rwish .
Some associated R codes: ellipse.R . fish.R . mvn.R . niche.par.plot.R . niche.plot.R . niche.runif.R . niche.size.R . nicheROVER-package.R . niiw.post.R . niw.coeffs.R . niw.mom.R . niw.post.R . overlap.R . overlap.plot.R . overlap.unif.R . rniw.R . rwish.R . Full nicheROVER package functions and examples
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