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neutralitytestr  

Test for a Neutral Evolutionary Model in Cancer Sequencing Data
View on CRAN: Click here


Download and install neutralitytestr package within the R console
Install from CRAN:
install.packages("neutralitytestr")

Install from Github:
library("remotes")
install_github("cran/neutralitytestr")

Install by package version:
library("remotes")
install_version("neutralitytestr", "0.0.3")



Attach the package and use:
library("neutralitytestr")
Maintained by
Marc Williams
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-04-11
Latest Update: 2021-02-16
Description:
Package takes frequencies of mutations as reported by high throughput sequencing data from cancer and fits a theoretical neutral model of tumour evolution. Package outputs summary statistics and contains code for plotting the data and model fits. See Williams et al 2016 and Williams et al 2017 for further details of the method.
How to cite:
Marc Williams (2018). neutralitytestr: Test for a Neutral Evolutionary Model in Cancer Sequencing Data. R package version 0.0.3, https://cran.r-project.org/web/packages/neutralitytestr. Accessed 21 Nov. 2024.
Previous versions and publish date:
0.0.1 (2018-04-11 10:05), 0.0.2 (2018-05-21 17:11)
Other packages that cited neutralitytestr R package
View neutralitytestr citation profile
Other R packages that neutralitytestr depends, imports, suggests or enhances
Complete documentation for neutralitytestr
Functions, R codes and Examples using the neutralitytestr R package
Some associated functions: VAFneutral . VAFselection . lsq_plot . neutralitytest . neutralitytestr . normalized_plot . plot_all . vaf_histogram . 
Some associated R codes: data.R . methods.R . metrics.R . neutralitytestr.R . plots.R . processing.R .  Full neutralitytestr package functions and examples
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