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neotoma2  

Working with the Neotoma Paleoecology Database
View on CRAN: Click here


Download and install neotoma2 package within the R console
Install from CRAN:
install.packages("neotoma2")

Install from Github:
library("remotes")
install_github("cran/neotoma2")

Install by package version:
library("remotes")
install_version("neotoma2", "1.1.0")



Attach the package and use:
library("neotoma2")
Maintained by
Dominguez Vidana Socorro
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2023-04-20
Latest Update: 2025-07-15
Description:
Access and manipulation of data using the Neotoma Paleoecology Database. .
How to cite:
Dominguez Vidana Socorro (2023). neotoma2: Working with the Neotoma Paleoecology Database. R package version 1.1.0, https://cran.r-project.org/web/packages/neotoma2. Accessed 27 Oct. 2026.
Previous versions and publish date:
(2026-09-15 03:00), 1.0.0 (2023-04-20 09:50), 1.0.1 (2023-05-23 16:12), 1.0.2 (2023-06-29 17:50), 1.0.3 (2024-02-28 08:50), 1.0.4 (2024-07-28 13:00), 1.0.5 (2024-08-21 00:00), 1.0.6 (2025-06-25 14:00), 1.0.7 (2025-07-15 05:30), 1.0.8 (2025-11-18 09:50), 1.0.9 (2025-11-26 00:50), 1.0.10 (2025-12-06 16:10), 1.0.11 (2025-12-14 07:30), 1.0.12 (2026-04-23 21:50)
Other packages that cited neotoma2 R package
View neotoma2 citation profile
Other R packages that neotoma2 depends, imports, suggests or enhances
Complete documentation for neotoma2
Functions, R codes and Examples using the neotoma2 R package
Some associated functions: add_chronology-collunit-chronology-data.frame-method . add_chronology . as.data.frame-authors-method . as.data.frame-chronologies-method . as.data.frame-chronology-method . as.data.frame-collunit-method . as.data.frame-collunits-method . as.data.frame-contact-method . as.data.frame-contacts-method . as.data.frame-dataset-method . as.data.frame-datasets-method . as.data.frame-publication-method . as.data.frame-publications-method . as.data.frame-site-method . as.data.frame-sites-method . as.data.frame-specimen-method . as.data.frame-specimens-method . as.list-sites-method . author-class . authors-class . build_chron . build_collunits . build_dataset . build_sample . build_sites . build_specimen . c-chronologies-method . c-collunits-method . c-contact-method . c-contacts-method . c-datasets-method . c-missingOrNULL-method . c-publications-method . c-sites-method . c-specimens-method . cash-chronologies-method . cash-chronology-method . cash-collunit-method . cash-collunits-method . cash-contact-method . cash-contacts-method . cash-dataset-method . cash-datasets-method . cash-publication-method . cash-sample-method . cash-samples-method . cash-set-chronology-method . cash-set-collunit-method . cash-set-dataset-method . cash-set-site-method . cash-set-specimen-method . cash-site-method . cash-sites-method . cash-specimen-method . cash-specimens-method . check_args . check_contacts.contacts . check_contacts . chroncontrols-site-method . chroncontrols-sites-method . chroncontrols . chronologies-class . chronologies-collunit-method . chronologies-collunits-method . chronologies-site-method . chronologies-sites-method . chronologies . chronology-class . cite_data-site-method . cite_data-sites-method . cite_data . clean.collunits . clean.datasets . clean . clean.sites . cleanNULL . collunit-class . collunits-class . collunits-site-method . collunits-sites-method . collunits . contact-class . contacts-class . coordinates-sites-method . coordinates . dataset-class . datasets-class . datasets-collunit-method . datasets-collunits-method . datasets-site-method . datasets-sites-method . datasets . doi-publication-method . doi-site-method . doi-sites-method . doi . filter . filter.sites . fix_null . get_contacts.default . get_contacts.numeric . get_contacts . get_datasets.default . get_datasets.numeric . get_datasets . get_datasets.sites . get_downloads.character . get_downloads.numeric . get_downloads . get_downloads.sites . get_manual . get_publications.default . get_publications.numeric . get_publications . get_publications.publication . get_publications.publications . get_sites.default . get_sites.numeric . get_sites . get_sites.sites . get_specimens.default . get_specimens.numeric . get_specimens . get_specimens.sites . get_table . getids.collunit . getids.collunits . getids . getids.site . getids.sites . length-chronologies-method . length-collunits-method . length-datasets-method . length-publications-method . length-samples-method . length-sites-method . length-specimens-method . missingOrNULL-class . names-collunit-method . names-contact-method . names-dataset-method . names-publication-method . names-publications-method . names-site-method . names-specimen-method . newURL . parseURL . parse_location . parse_site . parsebody . pingNeotoma . pipe . plot-sites-ANY-method . plotLeaflet-site-method . plotLeaflet-sites-method . plotLeaflet . publication-class . publications-class . repositories-class . repository-class . sample-class . samples-class . samples-collunit-method . samples-collunits-method . samples-site-method . samples-sites-method . samples . selectMatch-publication-logical-method . selectMatch-publication-numeric-method . selectMatch . set_chronology . set_collunit . set_contact . set_dataset . set_default-chronologies-method . set_default . set_publications . set_sample . set_server . set_site . show-collunit-method . show-collunits-method . show-contact-method . show-contacts-method . show-dataset-method . show-datasets-method . show-publication-method . show-publications-method . show-site-method . show-sites-method . show-specimen-method . show-specimens-method . showMatch-publication-method . showMatch . site-class . sites-class . specimen-class . specimens-class . specimens-collunit-method . specimens-collunits-method . specimens-site-method . specimens-sites-method . specimens . sub-collunits-numeric-ANY-method . sub-datasets-numeric-ANY-method . sub-site-character-ANY-method . sub-site-numeric-ANY-method . sub-sites-numeric-ANY-method . sub-specimens-numeric-ANY-method . sub-sub-chronologies-numeric-ANY-method . sub-sub-collunits-numeric-ANY-method . sub-sub-contacts-numeric-ANY-method . sub-sub-datasets-numeric-ANY-method . sub-sub-publications-numeric-ANY-method . sub-sub-samples-numeric-ANY-method . sub-sub-sites-numeric-ANY-method . sub-sub-specimens-numeric-ANY-method . sub-subset-collunits-ANY-ANY-ANY-method . sub-subset-datasets-ANY-ANY-ANY-method . sub-subset-publications-ANY-ANY-ANY-method . sub-subset-sites-ANY-ANY-ANY-method . sub-subset-specimens-ANY-ANY-ANY-method . subset-collunit-character-ANY-ANY-method . subset-collunit-numeric-ANY-ANY-method . subset-dataset-character-ANY-ANY-method . subset-dataset-numeric-ANY-ANY-method . subset-site-character-ANY-ANY-method . subset-site-numeric-ANY-ANY-method . subset-specimen-character-ANY-ANY-method . subset-specimen-numeric-ANY-ANY-method . summary-sites-method . taxa-collunit-method . taxa-collunits-method . taxa-site-method . taxa-sites-method . taxa . testNull . toJSON-sites-method . toJSON . toWide . use_na . write.csv-chronologies-method . write.csv-collunits-method . write.csv-datasets-method . write.csv-sites-method . write.csv-specimens-method . 
Some associated R codes: 01_classDefinitions.R . 02_genericDefinitions.R . build_chron.R . build_collunit.R . build_dataset.R . build_sample.R . build_site.R . build_specimen.R . check_args.R . check_contacts.R . chroncontrols.R . chronology-methods.R . clean.R . cleanNULL.R . collunits-methods.R . contact-methods.R . dataset-methods.R . filter.R . get_contacts.R . get_datasets.R . get_downloads.R . get_manual.R . get_publications.R . get_sites.R . get_specimens.R . get_table.R . neotoma-methods.R . parseURL.R . parse_body.R . parse_location.R . plotLeaflet.R . pubAuthors.R . publication-methods.R . samples-methods.R . samples.R . set_chronology.R . set_collunit.R . set_contacts.R . set_dataset.R . set_publications.R . set_sample.R . set_server.R . set_site.R . site-methods.R . specimen-methods.R . specimens.R . subset-methods.R . taxa.R . testNull.R . toJSON.R . toWide.R . use_na.R . utils-pipe.R .  Full neotoma2 package functions and examples
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