Other packages > Find by keyword >

nbTransmission  

Naive Bayes Transmission Analysis
View on CRAN: Click here


Download and install nbTransmission package within the R console
Install from CRAN:
install.packages("nbTransmission")

Install from Github:
library("remotes")
install_github("cran/nbTransmission")

Install by package version:
library("remotes")
install_version("nbTransmission", "1.1.4")



Attach the package and use:
library("nbTransmission")
Maintained by
Sarah V Leavitt
[Scholar Profile | Author Map]
First Published: 2020-07-13
Latest Update: 2024-01-30
Description:
Estimates the relative transmission probabilities between cases in an infectious disease outbreak or cluster using naive Bayes. Included are various functions to use these probabilities to estimate transmission parameters such as the generation/serial interval and reproductive number as well as finding the contribution of covariates to the probabilities and visualizing results. The ideal use is for an infectious disease dataset with metadata on the majority of cases but more informative data such as contact tracing or pathogen whole genome sequencing on only a subset of cases. For a detailed description of the methods see Leavitt et al. (2020) .
How to cite:
Sarah V Leavitt (2020). nbTransmission: Naive Bayes Transmission Analysis. R package version 1.1.4, https://cran.r-project.org/web/packages/nbTransmission. Accessed 10 May. 2025.
Previous versions and publish date:
1.1.1 (2020-07-13 11:00), 1.1.2 (2021-01-06 20:50), 1.1.3 (2024-01-10 20:53)
Other packages that cited nbTransmission R package
View nbTransmission citation profile
Other R packages that nbTransmission depends, imports, suggests or enhances
Complete documentation for nbTransmission
Functions, R codes and Examples using the nbTransmission R package
Some associated functions: clusterInfectors . estimateR . estimateRi . estimateRt . estimateRtAvg . estimateSI . indData . indToPair . nbHeatmap . nbNetwork . nbProbabilities . nbResults . pairData . performNB . performPEM . plotRt . 
Some associated R codes: calcProbabilities.R . calcR.R . calcSI.R . clusterInfectors.R . indData.R . indToPair.R . nbResults.R . pairData.R . performNB.R . visualizeResults.R .  Full nbTransmission package functions and examples
Downloads during the last 30 days
04/1004/1104/1204/1304/1404/1504/1604/1704/1804/1904/2004/2104/2204/2304/2404/2504/2604/2704/2804/2904/3005/0105/0205/0305/0405/0505/0605/0705/0805/09Downloads for nbTransmission02468101214161820222426TrendBars

Today's Hot Picks in Authors and Packages

distreg.vis  
Framework for the Visualization of Distributional Regression Models
Functions for visualizing distributional regression models fitted using the 'gamlss', 'bamlss' or 'b ...
Download / Learn more Package Citations See dependency  
hdpGLM  
Hierarchical Dirichlet Process Generalized Linear Models
Implementation of MCMC algorithms to estimate the Hierarchical Dirichlet Process Generalized Linear ...
Download / Learn more Package Citations See dependency  
specklestar  
Reduction of Speckle Data from BTA 6-m Telescope
A set of functions for obtaining positional parameters and magnitude difference between components o ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
dataprep  
Efficient and Flexible Data Preprocessing Tools
Efficiently and flexibly preprocess data using a set of data filtering, deletion, and interpolation ...
Download / Learn more Package Citations See dependency  

24,205

R Packages

207,311

Dependencies

65,402

Author Associations

24,206

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA