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nanostringr  

Performs Quality Control, Data Normalization, and Batch Effect Correction for 'NanoString nCounter' Data
View on CRAN: Click here


Download and install nanostringr package within the R console
Install from CRAN:
install.packages("nanostringr")

Install from Github:
library("remotes")
install_github("cran/nanostringr")

Install by package version:
library("remotes")
install_version("nanostringr", "0.5.0")



Attach the package and use:
library("nanostringr")
Maintained by
Derek Chiu
[Scholar Profile | Author Map]
First Published: 2019-03-15
Latest Update: 2023-08-15
Description:
Provides quality control (QC), normalization, and batch effect correction operations for 'NanoString nCounter' data, Talhouk et al. (2016) . Various metrics are used to determine which samples passed or failed QC. Gene expression should first be normalized to housekeeping genes, before a reference-based approach is used to adjust for batch effects. Raw NanoString data can be imported in the form of Reporter Code Count (RCC) files.
How to cite:
Derek Chiu (2019). nanostringr: Performs Quality Control, Data Normalization, and Batch Effect Correction for 'NanoString nCounter' Data. R package version 0.5.0, https://cran.r-project.org/web/packages/nanostringr. Accessed 30 Apr. 2025.
Previous versions and publish date:
0.1.0 (2019-03-15 15:50), 0.1.1 (2019-03-25 23:50), 0.1.2 (2019-04-03 20:00), 0.1.3 (2019-04-24 06:20), 0.1.4 (2019-05-09 21:20), 0.2.0 (2021-02-06 10:20), 0.3.0 (2022-05-25 00:30), 0.4.0 (2022-08-20 02:10), 0.4.1 (2023-08-15 19:00), 0.4.2 (2024-06-11 21:30), 0.5.0 (2025-02-05 11:30)
Other packages that cited nanostringr R package
View nanostringr citation profile
Other R packages that nanostringr depends, imports, suggests or enhances
Complete documentation for nanostringr
Functions, R codes and Examples using the nanostringr R package
Some associated functions: CCplot . HKnorm . NanoStringQC . cohort . expQC . nanostringr-package . normalize_pools . normalize_random . rcc . refMethod . 
Some associated R codes: CCplot.R . HKnorm.R . NanoStringQC.R . check.R . data.R . nanostringr-package.R . normalize_pools.R . normalize_random.R . read_rcc.R . refMethod.R . utils.R .  Full nanostringr package functions and examples
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