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nLTT
View on CRAN: Click
here
Download and install nLTT package within the R console
Install from CRAN:
install.packages("nLTT")
Install from Github:
library("remotes")
install_github("cran/nLTT")
Install by package version:
library("remotes")
install_version("nLTT", "1.4.9")
Attach the package and use:
library("nLTT")
Maintained by
Thijs Janzen
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2015-01-19
Latest Update: 2023-08-21
Description:
Provides functions to calculate the normalised Lineage-Through-
Time (nLTT) statistic, given two phylogenetic trees. The nLTT statistic measures
the difference between two Lineage-Through-Time curves, where each curve is
normalised both in time and in number of lineages.
How to cite:
Thijs Janzen (2015). nLTT: Calculate the NLTT Statistic. R package version 1.4.9, https://cran.r-project.org/web/packages/nLTT. Accessed 30 Jan. 2025.
Previous versions and publish date:
1.0 (2015-01-19 19:02), 1.1.1 (2015-12-07 22:21), 1.1 (2015-04-21 17:48), 1.2.1 (2016-06-06 12:03), 1.2 (2016-04-26 16:50), 1.3.1 (2016-10-12 00:10), 1.3 (2016-10-05 14:37), 1.4.1 (2019-05-19 01:10), 1.4.3 (2020-01-13 09:20), 1.4.6 (2022-02-18 16:10), 1.4.8 (2022-05-24 13:00), 1.4 (2018-04-18 12:37)
Other packages that cited nLTT R package
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Other R packages that nLTT depends,
imports, suggests or enhances
Complete documentation for nLTT
Functions, R codes and Examples using
the nLTT R package
Some associated functions: abc_smc_nltt . check_input_event_times . check_phylogenies . check_step_type . check_time_unit . default_params_doc . exampleTrees . get_average_nltt_matrix . get_branching_times . get_n_lineages . get_nltt_values . get_norm_brts . get_norm_n . get_phylogeny_nltt_matrix . mcmc_nltt . nLTT-internal . nLTT-package . nLTTstat . nLTTstat_exact . nltt_diff . nltt_diff_exact . nltt_diff_exact_brts . nltt_diff_exact_calc_extinct . nltt_diff_exact_extinct . nltt_diff_exact_norm_brts . nltt_lines . nltt_plot . nltts_diff . nltts_plot . stretch_nltt_matrix .
Some associated R codes: ABC_SMC.R . check_phylogenies.R . check_step_type.R . check_time_unit.R . default_params_doc.R . get_average_nltt_matrix.R . get_branching_times.R . get_n_lineages.R . get_nltt_values.R . get_norm_brts.R . get_norm_n.R . get_phylogeny_nltt_matrix.R . nLTTDiff.R . nltt_diff_exact_extinct.R . nltts_plot.R . plot_nLTT.R . stretch_nltt_matrix.R . Full nLTT package functions and examples
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