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myTAI  

Evolutionary Transcriptomics
View on CRAN: Click here


Download and install myTAI package within the R console
Install from CRAN:
install.packages("myTAI")

Install from Github:
library("remotes")
install_github("cran/myTAI")

Install by package version:
library("remotes")
install_version("myTAI", "0.9.3")



Attach the package and use:
library("myTAI")
Maintained by
Hajk-Georg Drost
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2014-11-01
Latest Update: 2021-02-24
Description:
Investigate the evolution of biological processes by capturing evolutionary signatures in transcriptomes (Drost et al. (2017) ). The aim of this tool is to provide a transcriptome analysis environment to quantify the average evolutionary age of genes contributing to a transcriptome of interest (Drost et al. (2016) ).
How to cite:
Hajk-Georg Drost (2014). myTAI: Evolutionary Transcriptomics. R package version 0.9.3, https://cran.r-project.org/web/packages/myTAI
Previous versions and publish date:
0.0.1 (2014-11-01 23:53), 0.0.2 (2014-12-27 23:40), 0.1.0 (2015-05-24 13:09), 0.2.0 (2015-07-10 20:32), 0.2.1 (2015-07-23 06:51), 0.3.0 (2015-07-31 00:53), 0.4.0 (2016-05-04 13:03), 0.5.0 (2017-03-14 20:13), 0.6.0 (2017-07-03 16:04), 0.7.0 (2018-04-11 17:52), 0.8.0 (2018-05-23 17:33), 0.9.0 (2019-02-06 12:10), 0.9.1 (2019-03-11 00:10), 0.9.2 (2020-01-10 11:30)
Other packages that cited myTAI R package
View myTAI citation profile
Other R packages that myTAI depends, imports, suggests or enhances
Functions, R codes and Examples using the myTAI R package
Some associated functions: CollapseReplicates . CombinatorialSignificance . DiffGenes . DivergenceExpressionSetExample . EarlyConservationTest . EnrichmentTest . Expressed . FlatLineTest . GroupDiffs . MatchMap . PhyloExpressionSetExample . PlotBarRE . PlotCIRatio . PlotCategoryExpr . PlotContribution . PlotCorrelation . PlotDistribution . PlotEnrichment . PlotGeneSet . PlotGroupDiffs . PlotMeans . PlotMedians . PlotPattern . PlotRE . PlotReplicateQuality . PlotSelectedAgeDistr . PlotSignature . PlotVars . RE . REMatrix . ReductiveHourglassTest . ReverseHourglassTest . SelectGeneSet . TAI . TDI . TPI . age.apply . bar.colors . bootMatrix . ecScore . geom.mean . harm.mean . is.ExpressionSet . omitMatrix . pMatrix . pStrata . pTAI . pTDI . reversehourglassScore . rhScore . taxid . taxonomy . tf . 
Some associated R codes: CollapseReplicates.R . DiffGenes.R . EarlyConservationTest.R . EnrichmentTest.R . Expressed.R . FlatLineTest.R . GroupDiffs.R . MatchMap.R . PlotBarRE.R . PlotCIRatio.R . PlotCategoryExpr.R . PlotContribution.R . PlotCorrelation.R . PlotDistribution.R . PlotEnrichment.R . PlotGeneSet.R . PlotGroupDiffs.R . PlotMeans.R . PlotMedians.R . PlotPattern.R . PlotRE.R . PlotReplicateQuality.R . PlotSelectedAgeDistr.R . PlotSignature.R . PlotVars.R . RcppExports.R . ReductiveHourglassTest.R . ReverseHourglassTest.R . SelectGeneSet.R . TAI.R . TDI.R . TPI.R . age.apply.R . base.R . bootMatrix.R . combinatorialSignificance.R . custom.myTAI.cols.R . datasets.R . ecScore.R . geom.mean.R . harm.mean.R . is.ExpressionSet.R . myTAI-package.R . omitMatrix.R . pMatrix.R . pStrata.R . pTAI.R . pTDI.R . rel_exp.R . reversehourglassScore.R . rhScore.R . taxid.R . taxonomy.R . tf.R .  Full myTAI package functions and examples
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