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mutationtypes  

Validate and Convert Mutational Impacts Using Standard Genomic Dictionaries
View on CRAN: Click here


Download and install mutationtypes package within the R console
Install from CRAN:
install.packages("mutationtypes")

Install from Github:
library("remotes")
install_github("cran/mutationtypes")

Install by package version:
library("remotes")
install_version("mutationtypes", "0.0.1")



Attach the package and use:
library("mutationtypes")
Maintained by
Sam El-Kamand
[Scholar Profile | Author Map]
First Published: 2023-12-14
Latest Update: 2023-12-14
Description:
Check concordance of a vector of mutation impacts with standard dictionaries such as Sequence Ontology (SO) , Mutation Annotation Format (MAF) or Prediction and Annotation of Variant Effects (PAVE) . It enables conversion between SO/PAVE and MAF terms and selection of the most severe consequence where multiple ampersand (&) delimited impacts are given.
How to cite:
Sam El-Kamand (2023). mutationtypes: Validate and Convert Mutational Impacts Using Standard Genomic Dictionaries. R package version 0.0.1, https://cran.r-project.org/web/packages/mutationtypes. Accessed 16 Apr. 2025.
Previous versions and publish date:
No previous versions
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Complete documentation for mutationtypes
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