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mutationtypes
View on CRAN: Click
here
Download and install mutationtypes package within the R console
Install from CRAN:
install.packages("mutationtypes")
Install from Github:
library("remotes")
install_github("cran/mutationtypes") Install by package version:
library("remotes")
install_version("mutationtypes", "0.0.1") Attach the package and use:
library("mutationtypes")
Maintained by
Sam El-Kamand
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2023-12-14
Latest Update: 2023-12-14
Description:
Check concordance of a vector of mutation impacts with standard dictionaries such as Sequence Ontology (SO) , Mutation Annotation Format (MAF) or Prediction and Annotation of Variant Effects (PAVE) .
It enables conversion between SO/PAVE and MAF terms and selection of the most severe consequence where multiple ampersand (&) delimited impacts are given.
How to cite:
Sam El-Kamand (2023). mutationtypes: Validate and Convert Mutational Impacts Using Standard Genomic Dictionaries. R package version 0.0.1, https://cran.r-project.org/web/packages/mutationtypes. Accessed 14 Jun. 2026.
Previous versions and publish date:
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imports, suggests or enhances
Complete documentation for mutationtypes
Functions, R codes and Examples using
the mutationtypes R package
Some associated functions: mutation_types_convert_pave_to_maf . mutation_types_convert_so_to_maf . mutation_types_identify . mutation_types_maf . mutation_types_maf_palette . mutation_types_pave . mutation_types_pave_palette . mutation_types_so . mutation_types_so_palette . mutationtypes-package . select_most_severe_consequence_pave . select_most_severe_consequence_so .
Some associated R codes: mutation_types.R . mutationtypes-package.R . Full mutationtypes package functions and examples
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