Other packages > Find by keyword >

multiDEGGs  

Multi-Omic Differentially Expressed Gene-Gene Pairs
View on CRAN: Click here


Download and install multiDEGGs package within the R console
Install from CRAN:
install.packages("multiDEGGs")

Install from Github:
library("remotes")
install_github("cran/multiDEGGs")

Install by package version:
library("remotes")
install_version("multiDEGGs", "1.1.2")



Attach the package and use:
library("multiDEGGs")
Maintained by
Elisabetta Sciacca
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2025-06-05
Latest Update: 2025-07-29
Description:
Performs multi-omic differential network analysis by revealing differential interactions between molecular entities (genes, proteins, transcription factors, or other biomolecules) across the omic datasets provided. For each omic dataset, a differential network is constructed where links represent statistically significant differential interactions between entities. These networks are then integrated into a comprehensive visualization using distinct colors to distinguish interactions from different omic layers. This unified display allows interactive exploration of cross-omic patterns, such as differential interactions present at both transcript and protein levels. For each link, users can access differential statistical significance metrics (p values or adjusted p values, calculated via robust or traditional linear regression with interaction term) and differential regression plots. The methods implemented in this package are described in Sciacca et al. (2023) <doi:10.1093/bioinformatics/btad192>.
How to cite:
Elisabetta Sciacca (2025). multiDEGGs: Multi-Omic Differentially Expressed Gene-Gene Pairs. R package version 1.1.2, https://cran.r-project.org/web/packages/multiDEGGs. Accessed 21 Aug. 2026.
Previous versions and publish date:
(2026-07-09 06:33), 1.0.0 (2025-06-05 13:10), 1.1.0 (2025-07-29 18:30), 1.1.1 (2025-10-24 10:10), 1.1.2 (2026-01-16 01:40), 1.1.3 (2026-02-02 17:20), 1.2.0 (2026-03-24 14:10)
Other packages that cited multiDEGGs R package
View multiDEGGs citation profile
Other R packages that multiDEGGs depends, imports, suggests or enhances
Complete documentation for multiDEGGs
Functions, R codes and Examples using the multiDEGGs R package
Full multiDEGGs package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

preputils  
Utilities for Preparation of Data Analysis
Miscellaneous small utilities are provided to mitigate issues with messy, inconsistent or high dimen ...
Download / Learn more Package Citations See dependency  
artfima  
ARTFIMA Model Estimation
Fit and simulate ARTFIMA. Theoretical autocovariance function and spectral density function for stat ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
potential  
Implementation of the Potential Model
Provides functions to compute the potential model as defined by Stewart (1941) ...
Download / Learn more Package Citations See dependency  

28,332

R Packages

239,283

Dependencies

75,034

Author Associations

28,333

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA