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msigdbr  

MSigDB Gene Sets for Multiple Organisms in a Tidy Data Format
View on CRAN: Click here


Download and install msigdbr package within the R console
Install from CRAN:
install.packages("msigdbr")

Install from Github:
library("remotes")
install_github("cran/msigdbr")

Install by package version:
library("remotes")
install_version("msigdbr", "7.5.1")



Attach the package and use:
library("msigdbr")
Maintained by
Igor Dolgalev
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-04-12
Latest Update: 2022-03-30
Description:
Provides the 'Molecular Signatures Database' (MSigDB) gene sets typically used with the 'Gene Set Enrichment Analysis' (GSEA) software (Subramanian et al. 2005 , Liberzon et al. 2015 ) in a standard R data frame with key-value pairs. The package includes the human genes as listed in MSigDB as well as the corresponding symbols and IDs for frequently studied model organisms such as mouse, rat, pig, fly, and yeast.
How to cite:
Igor Dolgalev (2018). msigdbr: MSigDB Gene Sets for Multiple Organisms in a Tidy Data Format. R package version 7.5.1, https://cran.r-project.org/web/packages/msigdbr. Accessed 22 Dec. 2024.
Previous versions and publish date:
6.1.1 (2018-04-12 11:16), 6.2.1 (2018-10-09 23:50), 7.0.1 (2019-09-04 07:10), 7.1.1 (2020-05-14 07:30), 7.2.1 (2020-10-02 09:00), 7.4.1 (2021-05-05 18:10)
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Other R packages that msigdbr depends, imports, suggests or enhances
Complete documentation for msigdbr
Functions, R codes and Examples using the msigdbr R package
Some associated functions: msigdbr . msigdbr_collections . msigdbr_show_species . msigdbr_species . pipe . 
Some associated R codes: functions.R . utils-pipe.R .  Full msigdbr package functions and examples
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