Other packages > Find by keyword >

msig  

An R Package for Exploring Molecular Signatures Database
View on CRAN: Click here


Download and install msig package within the R console
Install from CRAN:
install.packages("msig")

Install from Github:
library("remotes")
install_github("cran/msig")

Install by package version:
library("remotes")
install_version("msig", "1.0")



Attach the package and use:
library("msig")
Maintained by
Jing Zhang
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-06-29
Latest Update: 2021-06-29
Description:
The Molecular Signatures Database ('MSigDB') is one of the most widely used and comprehensive databases of gene sets for performing gene set enrichment analysis . The 'msig' package provides you with powerful, easy-to-use and flexible query functions for the 'MsigDB' database. There are 2 query modes in the 'msig' package: online query and local query. Both queries contain 2 steps: gene set name and gene. The online search is divided into 2 modes: registered search and non-registered browse. For registered search, email that you registered should be provided. Local queries can be made from local database, which can be updated by msig_update() function.
How to cite:
Jing Zhang (2021). msig: An R Package for Exploring Molecular Signatures Database. R package version 1.0, https://cran.r-project.org/web/packages/msig. Accessed 11 Aug. 2026.
Previous versions and publish date:
(2026-07-10 12:09), 1.0 (2021-06-29 09:50)
Other packages that cited msig R package
View msig citation profile
Other R packages that msig depends, imports, suggests or enhances
Complete documentation for msig
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

lactcurves  
Lactation Curve Parameter Estimation
AllCurves() runs multiple lactation curve models and extracts selection criteria for each model. Th ...
Download / Learn more Package Citations See dependency  
phonenumber  
Convert Letters to Numbers and Back as on a Telephone Keypad
Convert English letters to numbers or numbers to English letters as on a telephone keypad. When con ...
Download / Learn more Package Citations See dependency  
Rssa  
A Collection of Methods for Singular Spectrum Analysis
Methods and tools for Singular Spectrum Analysis including decomposition, forecasting and gap-filli ...
Download / Learn more Package Citations See dependency  
gprofiler2  
Interface to the 'g:Profiler' Toolset
A toolset for functional enrichment analysis and visualization, gene/protein/SNP identifier conversi ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  

28,313

R Packages

239,283

Dependencies

74,752

Author Associations

28,314

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA