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msig
View on CRAN: Click
here
Download and install msig package within the R console
Install from CRAN:
install.packages("msig")
Install from Github:
library("remotes")
install_github("cran/msig") Install by package version:
library("remotes")
install_version("msig", "1.0") Attach the package and use:
library("msig")
Maintained by
Jing Zhang
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-06-29
Latest Update: 2021-06-29
Description:
The Molecular Signatures Database ('MSigDB') is one of the most widely
used and comprehensive databases of gene sets for performing gene set
enrichment analysis . The 'msig' package provides
you with powerful, easy-to-use and flexible query functions for the 'MsigDB'
database.
There are 2 query modes in the 'msig' package: online query and local query.
Both queries contain 2 steps: gene set name and gene.
The online search is divided into 2 modes: registered search and
non-registered browse. For registered search, email that you registered should
be provided.
Local queries can be made from local database, which can be updated by msig_update() function.
How to cite:
Jing Zhang (2021). msig: An R Package for Exploring Molecular Signatures Database. R package version 1.0, https://cran.r-project.org/web/packages/msig. Accessed 01 Sep. 2026.
Previous versions and publish date:
(2026-07-10 12:09), 1.0 (2021-06-29 09:50)
Other packages that cited msig R package
View msig citation profile
Other R packages that msig depends,
imports, suggests or enhances
Complete documentation for msig
Functions, R codes and Examples using
the msig R package
Some associated functions: NewMsigDB . browse_msig . browse_show_collection . local_msig . local_version . msig_detail . msig_download . msig_filt . msig_gene . msig_geneSymbol . msig_update . msig_version . msig_view . read_msigdb_xml . related_geneset . search_msig . search_show_collection . search_show_contributor . search_show_organism . show_local_collection . show_local_contributor . show_local_contributor_org . show_local_data . show_local_sub_collection . similarity_geneset .
Some associated R codes: add_color_to_text.R . cmd_NewMsigDB.R . cmd_download.R . cmd_filt.R . cmd_to_sql.R . cmd_update.R . cmd_version.R . cmd_view.R . local_query.R . local_show_collection.R . local_show_data.R . local_version.R . msig_gene.R . msig_gene.character.R . msig_gene.data.frame.R . msig_geneSymbol.R . online_gst_brow_1_show_collection.R . online_gst_brow_2_query.R . online_gst_detail_detail.R . online_gst_detail_related.R . online_gst_detail_similarity.R . online_gst_sch_1_show_collection.R . online_gst_sch_1_show_contributor.R . online_gst_sch_1_show_organism.R . online_gst_sch_2_query.R . read_msigdb_xml.R . show_local_contributor.R . show_local_contributor_org.R . show_local_organism.R . show_local_sub_collection.R . zzz.R . Full msig package functions and examples
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