Other packages > Find by keyword >

msig  

An R Package for Exploring Molecular Signatures Database
View on CRAN: Click here


Download and install msig package within the R console
Install from CRAN:
install.packages("msig")

Install from Github:
library("remotes")
install_github("cran/msig")

Install by package version:
library("remotes")
install_version("msig", "1.0")



Attach the package and use:
library("msig")
Maintained by
Jing Zhang
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-06-29
Latest Update: 2021-06-29
Description:
The Molecular Signatures Database ('MSigDB') is one of the most widely used and comprehensive databases of gene sets for performing gene set enrichment analysis . The 'msig' package provides you with powerful, easy-to-use and flexible query functions for the 'MsigDB' database. There are 2 query modes in the 'msig' package: online query and local query. Both queries contain 2 steps: gene set name and gene. The online search is divided into 2 modes: registered search and non-registered browse. For registered search, email that you registered should be provided. Local queries can be made from local database, which can be updated by msig_update() function.
How to cite:
Jing Zhang (2021). msig: An R Package for Exploring Molecular Signatures Database. R package version 1.0, https://cran.r-project.org/web/packages/msig. Accessed 21 Jul. 2026.
Previous versions and publish date:
(2026-07-10 12:09), 1.0 (2021-06-29 09:50)
Other packages that cited msig R package
View msig citation profile
Other R packages that msig depends, imports, suggests or enhances
Complete documentation for msig
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
OSTE  
Optimal Survival Trees Ensemble
Function for growing survival trees ensemble ('Naz Gul', 'Nosheen Faiz', 'Dan Brawn', 'Rafal Kulakow ...
Download / Learn more Package Citations See dependency  
truncnormbayes  
Estimates Moments for a Truncated Normal Distribution using 'Stan'
Finds the posterior modes for the mean and standard deviation for a truncated normal distribution wi ...
Download / Learn more Package Citations See dependency  
splash  
Simple Process-Led Algorithms for Simulating Habitats
This program calculates bioclimatic indices and fluxes (radiation, evapotranspiration, soil moistur ...
Download / Learn more Package Citations See dependency  
beastier  
Call 'BEAST2'
'BEAST2' () is a widely used Bayesian phylogenetic tool, that uses DNA/RNA/ ...
Download / Learn more Package Citations See dependency  
netgen  
Network Generator for Combinatorial Graph Problems
Methods for the generation of a wide range of network geographies, e.g., grid networks or clustered ...
Download / Learn more Package Citations See dependency  

27,889

R Packages

239,283

Dependencies

74,019

Author Associations

27,890

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA