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msig  

An R Package for Exploring Molecular Signatures Database
View on CRAN: Click here


Download and install msig package within the R console
Install from CRAN:
install.packages("msig")

Install from Github:
library("remotes")
install_github("cran/msig")

Install by package version:
library("remotes")
install_version("msig", "1.0")



Attach the package and use:
library("msig")
Maintained by
Jing Zhang
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-06-29
Latest Update: 2021-06-29
Description:
The Molecular Signatures Database ('MSigDB') is one of the most widely used and comprehensive databases of gene sets for performing gene set enrichment analysis . The 'msig' package provides you with powerful, easy-to-use and flexible query functions for the 'MsigDB' database. There are 2 query modes in the 'msig' package: online query and local query. Both queries contain 2 steps: gene set name and gene. The online search is divided into 2 modes: registered search and non-registered browse. For registered search, email that you registered should be provided. Local queries can be made from local database, which can be updated by msig_update() function.
How to cite:
Jing Zhang (2021). msig: An R Package for Exploring Molecular Signatures Database. R package version 1.0, https://cran.r-project.org/web/packages/msig. Accessed 22 Dec. 2024.
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