Other packages > Find by keyword >

mpactr  

Correction of Preprocessed MS Data
View on CRAN: Click here


Download and install mpactr package within the R console
Install from CRAN:
install.packages("mpactr")

Install from Github:
library("remotes")
install_github("cran/mpactr")

Install by package version:
library("remotes")
install_version("mpactr", "0.3.3")



Attach the package and use:
library("mpactr")
Maintained by
Patrick Schloss
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-09-10
Latest Update: 2025-03-29
Description:
An 'R' implementation of the 'python' program Metabolomics Peak Analysis Computational Tool ('MPACT') (Robert M. Samples, Sara P. Puckett, and Marcy J. Balunas (2023) <doi:10.1021/acs.analchem.2c04632>). Filters in the package serve to address common errors in tandem mass spectrometry preprocessing, including: (1) isotopic patterns that are incorrectly split during preprocessing, (2) features present in solvent blanks due to carryover between samples, (3) features whose abundance is greater than user-defined abundance threshold in a specific group of samples, for example media blanks, (4) ions that are inconsistent between technical replicates, and (5) in-source fragment ions created during ionization before fragmentation in the tandem mass spectrometry workflow.
How to cite:
Patrick Schloss (2024). mpactr: Correction of Preprocessed MS Data. R package version 0.3.3, https://cran.r-project.org/web/packages/mpactr. Accessed 24 Oct. 2026.
Previous versions and publish date:
(2026-07-09 06:32), 0.1.0 (2024-09-10 12:00), 0.2.0 (2025-03-13 20:50), 0.2.1 (2025-03-29 01:30), 0.3.0 (2025-09-08 00:10), 0.3.1 (2025-09-28 01:30), 0.3.2 (2026-05-14 22:50)
Other packages that cited mpactr R package
View mpactr citation profile
Other R packages that mpactr depends, imports, suggests or enhances
Complete documentation for mpactr
Functions, R codes and Examples using the mpactr R package
Full mpactr package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

r3PG  
Simulating Forest Growth using the 3-PG Model
Provides a flexible and easy-to-use interface for the Physiological Processes Predicting Growth (3-P ...
Download / Learn more Package Citations See dependency  
OOBCurve  
Out of Bag Learning Curve
Provides functions to calculate the out-of-bag learning curve for random forests for any measure tha ...
Download / Learn more Package Citations See dependency  
visdat  
Preliminary Visualisation of Data
Create preliminary exploratory data visualisations of an entire dataset to identify problems or une ...
Download / Learn more Package Citations See dependency  
funprog  
Functional Programming
High-order functions for data manipulation : sort or group data, given one or more auxiliary func ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
RcmdrPlugin.depthTools  
R Commander Depth Tools Plug-in
We provide an Rcmdr plug-in based on the depthTools package, which implements different robust stat ...
Download / Learn more Package Citations See dependency  

29,218

R Packages

247,686

Dependencies

77,281

Author Associations

29,081

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA