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motmot  

Models of Trait Macroevolution on Trees
View on CRAN: Click here


Download and install motmot package within the R console
Install from CRAN:
install.packages("motmot")

Install from Github:
library("remotes")
install_github("cran/motmot")

Install by package version:
library("remotes")
install_version("motmot", "2.1.3")



Attach the package and use:
library("motmot")
Maintained by
Mark Puttick
[Scholar Profile | Author Map]
First Published: 2012-10-29
Latest Update: 2019-11-25
Description:
Functions for fitting models of trait evolution on phylogenies for continuous traits. The majority of functions described in Thomas and Freckleton (2012) and include functions that allow for tests of variation in the rates of trait evolution.
How to cite:
Mark Puttick (2012). motmot: Models of Trait Macroevolution on Trees. R package version 2.1.3, https://cran.r-project.org/web/packages/motmot. Accessed 09 May. 2025.
Previous versions and publish date:
1.0.1 (2012-10-29 08:59), 2.1.2 (2019-06-09 18:00), 2.1 (2019-05-28 23:01)
Other packages that cited motmot R package
View motmot citation profile
Other R packages that motmot depends, imports, suggests or enhances
Complete documentation for motmot
Functions, R codes and Examples using the motmot R package
Some associated functions: ML.RatePhylo . RatePhylo.allCI . addFossilToPhy . allopatric.data . anolis.data . anolis.tree . as.rateData . as.rateMatrix . blomberg.k . calcCutOff . chr.disp.lrt . chr.disp.param . chr.disp.sim . contemporaryPhy . dropTipPartial . fairProportions . finch.data . finch.tree . likRatePhylo . likTraitPhylo . mammals . mcmc.plot . motmot-package . node.descendents . nodeTimes . optim.likRatePhylo . phyloCovar . phyloMean . phyloVar . pic.pgls . plot.timeSlice.ML . plot.traitMedusa.model . sampleShid . sortTraitData . summary.traitMedusa . traitData.plot . transformPhylo.MCMC . transformPhylo.ML . transformPhylo.ll . transformPhylo . transformPhylo.sim . transformRateMatrix . 
Some associated R codes: ML.RatePhylo.R . RData.R . RDataTree.R . RData_finch_allopatric.R . RData_finch_data.R . RData_finch_tree.R . RData_mammals.R . RatePhylo.allCI.R . addFossilToPhy.R . as.rateData.R . as.rateMatrix.R . blomberg.k.R . calcCutOff.R . chr.disp.lrt.R . chr.disp.param.R . chr.disp.sim.R . chr.displacement_fun.R . contemporaryPhy.R . dropTipPartial.R . fairProportions.R . likRatePhylo.R . likTraitPhylo.R . mcmc.plot.R . motmot-package.R . node.descendents.R . nodeTimes.R . optim.likRatePhylo.R . phyloCovar.R . phyloMean.R . phyloVar.R . pic.pgls.R . plot.timeSlice.ML.R . plot.traitMedusa.model.R . sampleShid.R . sortTraitData.R . summary.traitMedusa.R . supplementary_fun.R . traitData.plot.R . transformPhylo.MCMC.R . transformPhylo.ML.R . transformPhylo.R . transformPhylo.ll.R . transformPhylo.sim.R . transformRateMatrix.R .  Full motmot package functions and examples
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