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momentuHMM  

Maximum Likelihood Analysis of Animal Movement Behavior Using Multivariate Hidden Markov Models
View on CRAN: Click here


Download and install momentuHMM package within the R console
Install from CRAN:
install.packages("momentuHMM")

Install from Github:
library("remotes")
install_github("cran/momentuHMM")

Install by package version:
library("remotes")
install_version("momentuHMM", "1.5.5")



Attach the package and use:
library("momentuHMM")
Maintained by
Brett McClintock
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-06-16
Latest Update: 2022-10-18
Description:
Extended tools for analyzing telemetry data using generalized hidden Markov models. Features of momentuHMM (pronounced ``momentum'') include data pre-processing and visualization, fitting HMMs to location and auxiliary biotelemetry or environmental data, biased and correlated random walk movement models, hierarchical HMMs, multiple imputation for incorporating location measurement error and missing data, user-specified design matrices and constraints for covariate modelling of parameters, random effects, decoding of the state process, visualization of fitted models, model checking and selection, and simulation. See McClintock and Michelot (2018) .
How to cite:
Brett McClintock (2017). momentuHMM: Maximum Likelihood Analysis of Animal Movement Behavior Using Multivariate Hidden Markov Models. R package version 1.5.5, https://cran.r-project.org/web/packages/momentuHMM
Previous versions and publish date:
1.0.0 (2017-06-16 22:02), 1.0.1 (2017-07-19 22:55), 1.1.0 (2017-08-16 00:20), 1.1.1 (2017-09-20 23:44), 1.2.0 (2017-10-20 11:09), 1.3.0 (2017-12-08 22:55), 1.4.0 (2018-02-27 18:33), 1.4.1 (2018-05-22 05:22), 1.4.2 (2018-06-20 07:18), 1.4.3 (2018-11-22 09:40), 1.5.0 (2019-12-18 03:10), 1.5.1 (2020-03-06 07:00), 1.5.2 (2021-01-08 20:20), 1.5.3 (2021-07-07 06:20), 1.5.4 (2021-09-03 06:30)
Other packages that cited momentuHMM R package
View momentuHMM citation profile
Other R packages that momentuHMM depends, imports, suggests or enhances
Functions, R codes and Examples using the momentuHMM R package
Some associated functions: AIC.momentuHMM . AICweights . CIbeta . CIreal . HMMfits . MIfitHMM . MIpool . XBloop_rcpp . allProbs . checkPar0 . circAngles . crawlMerge . crawlWrap . crwData . crwHierData . crwHierSim . crwSim . dbern_rcpp . dbeta_rcpp . dcat_rcpp . dexp_rcpp . dgamma_rcpp . distAngle . dlnorm_rcpp . dlogis_rcpp . dmvnorm_rcpp . dnbinom_rcpp . dnorm_rcpp . dpois_rcpp . dt_rcpp . dvm_rcpp . dweibull_rcpp . dwrpcauchy_rcpp . exampleData . expandPar . fitHMM . formatHierHMM . getCovNames . getDM_rcpp . getPar . getPar0 . getParDM . getTrProbs . is.HMMfits . is.crwData . is.crwHierData . is.crwHierSim . is.crwSim . is.miHMM . is.miSum . is.momentuHMM . is.momentuHMMData . is.momentuHierHMM . is.momentuHierHMMData . logAlpha . logBeta . miHMM . miSum . mixtureProbs . momentuHMM . momentuHMMData . momentuHierHMM . momentuHierHMMData . n2w . nLogLike . nLogLike_rcpp . parDef . plot.crwData . plot.miHMM . plot.miSum . plot.momentuHMM . plot.momentuHMMData . plotPR . plotSat . plotSpatialCov . plotStates . plotStationary . prepData . print.miHMM . print.miSum . print.momentuHMM . pseudoRes . randomEffects . setModelName . setStateNames . simData . simObsData . stateProbs . stationary . summary.momentuHMMData . timeInStates . trMatrix_rcpp . turnAngle . viterbi . w2n . 
Some associated R codes: AIC_momentuHMM.R . AICweights.R . CIbeta.R . CIreal.R . HMMfits.R . MIfitHMM.R . MIpool.R . RcppExports.R . allProbs.R . checkInputs.R . checkPar0.R . circAngles.R . crawlMerge.R . crawlWrap.R . crwData.R . crwHierData.R . crwHierSim.R . crwSim.R . distAngle.R . exampleData.R . expandPar.R . fitHMM.R . formatHierFormula.R . formatHierHMM.R . formatRecharge.R . formatmiSum.R . getCovNames.R . getDM.R . getPar.R . getPar0.R . getParDM.R . getSplineDM.R . getTrProbs.R . getWorkBounds.R . getXB.R . get_fixParIndex.R . get_inflation.R . get_ncmean.R . get_retrySD.R . getboundInd.R . is_formula.R . logAlpha.R . logBeta.R . miHMM.R . miSum.R . mixtureProbs.R . momentuHMM.R . momentuHMMData.R . momentuHMM_utils.R . momentuHierHMM.R . momentuHierHMMData.R . moveData.R . moveHMMwrap.R . n2w.R . nLogLike.R . parDef.R . plotPR.R . plotSat.R . plotSpatialCov.R . plotStates.R . plotStationary.R . plot_crwData.R . plot_miHMM.R . plot_miSum.R . plot_momentuHMM.R . plot_momentuHMMData.R . prepData.R . printMessage.R . print_miHMM.R . print_miSum.R . print_momentuHMM.R . pseudoRes.R . randomEffects.R . rwrpcauchy.R . setModelName.R . setStateNames.R . simData.R . simHierData.R . simObsData.R . stateFormulas.R . stateProbs.R . stationary.R . summary_momentuHMMData.R . timeInStates.R . turnAngle.R . viterbi.R . w2n.R .  Full momentuHMM package functions and examples
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