Other packages > Find by keyword >

momentuHMM  

Maximum Likelihood Analysis of Animal Movement Behavior Using Multivariate Hidden Markov Models
View on CRAN: Click here


Download and install momentuHMM package within the R console
Install from CRAN:
install.packages("momentuHMM")

Install from Github:
library("remotes")
install_github("cran/momentuHMM")

Install by package version:
library("remotes")
install_version("momentuHMM", "1.5.8")



Attach the package and use:
library("momentuHMM")
Maintained by
Brett McClintock
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-06-16
Latest Update: 2025-07-21
Description:
Extended tools for analyzing telemetry data using generalized hidden Markov models. Features of momentuHMM (pronounced ``momentum'') include data pre-processing and visualization, fitting HMMs to location and auxiliary biotelemetry or environmental data, biased and correlated random walk movement models, hierarchical HMMs, multiple imputation for incorporating location measurement error and missing data, user-specified design matrices and constraints for covariate modelling of parameters, random effects, decoding of the state process, visualization of fitted models, model checking and selection, and simulation. See McClintock and Michelot (2018) .
How to cite:
Brett McClintock (2017). momentuHMM: Maximum Likelihood Analysis of Animal Movement Behavior Using Multivariate Hidden Markov Models. R package version 1.5.8, https://cran.r-project.org/web/packages/momentuHMM. Accessed 20 Aug. 2026.
Previous versions and publish date:
(2026-07-09 06:32), 1.0.0 (2017-06-16 22:02), 1.0.1 (2017-07-19 22:55), 1.1.0 (2017-08-16 00:20), 1.1.1 (2017-09-20 23:44), 1.2.0 (2017-10-20 11:09), 1.3.0 (2017-12-08 22:55), 1.4.0 (2018-02-27 18:33), 1.4.1 (2018-05-22 05:22), 1.4.2 (2018-06-20 07:18), 1.4.3 (2018-11-22 09:40), 1.5.0 (2019-12-18 03:10), 1.5.1 (2020-03-06 07:00), 1.5.2 (2021-01-08 20:20), 1.5.3 (2021-07-07 06:20), 1.5.4 (2021-09-03 06:30), 1.5.5 (2022-10-18 22:52), 1.5.6 (2025-07-22 01:20), 1.5.7 (2025-10-21 20:30)
Other packages that cited momentuHMM R package
View momentuHMM citation profile
Other R packages that momentuHMM depends, imports, suggests or enhances
Complete documentation for momentuHMM
Functions, R codes and Examples using the momentuHMM R package
Some associated functions: AIC.momentuHMM . AICweights . CIbeta . CIreal . HMMfits . MIfitHMM . MIpool . XBloop_rcpp . allProbs . checkPar0 . circAngles . crawlMerge . crawlWrap . crwData . crwHierData . crwHierSim . crwSim . dbern_rcpp . dbeta_rcpp . dcat_rcpp . dexp_rcpp . dgamma_rcpp . distAngle . dlnorm_rcpp . dlogis_rcpp . dmvnorm_rcpp . dnbinom_rcpp . dnorm_rcpp . dpois_rcpp . dt_rcpp . dvm_rcpp . dweibull_rcpp . dwrpcauchy_rcpp . exampleData . expandPar . fitHMM . formatHierHMM . getCovNames . getDM_rcpp . getPar . getPar0 . getParDM . getTrProbs . is.HMMfits . is.crwData . is.crwHierData . is.crwHierSim . is.crwSim . is.miHMM . is.miSum . is.momentuHMM . is.momentuHMMData . is.momentuHierHMM . is.momentuHierHMMData . logAlpha . logBeta . miHMM . miSum . mixtureProbs . momentuHMM . momentuHMMData . momentuHierHMM . momentuHierHMMData . n2w . nLogLike . nLogLike_rcpp . parDef . plot.crwData . plot.miHMM . plot.miSum . plot.momentuHMM . plot.momentuHMMData . plotPR . plotSat . plotSpatialCov . plotStates . plotStationary . prepData . print.miHMM . print.miSum . print.momentuHMM . pseudoRes . randomEffects . setModelName . setStateNames . simData . simObsData . stateProbs . stationary . summary.momentuHMMData . timeInStates . trMatrix_rcpp . turnAngle . viterbi . w2n . 
Some associated R codes: AIC_momentuHMM.R . AICweights.R . CIbeta.R . CIreal.R . HMMfits.R . MIfitHMM.R . MIpool.R . RcppExports.R . allProbs.R . checkInputs.R . checkPar0.R . circAngles.R . crawlMerge.R . crawlWrap.R . crwData.R . crwHierData.R . crwHierSim.R . crwSim.R . distAngle.R . exampleData.R . expandPar.R . fitHMM.R . formatHierFormula.R . formatHierHMM.R . formatRecharge.R . formatmiSum.R . getCovNames.R . getDM.R . getPar.R . getPar0.R . getParDM.R . getSplineDM.R . getTrProbs.R . getWorkBounds.R . getXB.R . get_fixParIndex.R . get_inflation.R . get_ncmean.R . get_retrySD.R . getboundInd.R . is_formula.R . logAlpha.R . logBeta.R . miHMM.R . miSum.R . mixtureProbs.R . momentuHMM.R . momentuHMMData.R . momentuHMM_utils.R . momentuHierHMM.R . momentuHierHMMData.R . moveData.R . moveHMMwrap.R . n2w.R . nLogLike.R . parDef.R . plotPR.R . plotSat.R . plotSpatialCov.R . plotStates.R . plotStationary.R . plot_crwData.R . plot_miHMM.R . plot_miSum.R . plot_momentuHMM.R . plot_momentuHMMData.R . prepData.R . printMessage.R . print_miHMM.R . print_miSum.R . print_momentuHMM.R . pseudoRes.R . randomEffects.R . rwrpcauchy.R . setModelName.R . setStateNames.R . simData.R . simHierData.R . simObsData.R . stateFormulas.R . stateProbs.R . stationary.R . summary_momentuHMMData.R . timeInStates.R . turnAngle.R . viterbi.R . w2n.R .  Full momentuHMM package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

mapaccuracy  
Unbiased Thematic Map Accuracy and Area
Unbiased estimators of overall and per-class thematic map accuracy and area published in Olofsson et ...
Download / Learn more Package Citations See dependency  
AsthmaNHANES  
Asthma Data Sets from NHANES
Data sets and examples from National Health and Nutritional Examination Survey (NHANES). ...
Download / Learn more Package Citations See dependency  
Brundle  
Normalisation Tools for Inter-Condition Variability of ChIP-Seq Data
Inter-sample condition variability is a key challenge of normalising ChIP-seq data. This implementat ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
ggtea  
Palettes and Themes for 'ggplot2'
A collection of palettes and themes for 'ggplot2', offering a light, pastel aesthetic. Syntax follow ...
Download / Learn more Package Citations See dependency  
matlabr  
An Interface for MATLAB using System Calls
Provides users to call MATLAB from using the "system" command. Allows users to submit lines of code ...
Download / Learn more Package Citations See dependency  

28,313

R Packages

239,283

Dependencies

75,034

Author Associations

28,314

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA