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mizer  

Dynamic Multi-Species Size Spectrum Modelling
View on CRAN: Click here


Download and install mizer package within the R console
Install from CRAN:
install.packages("mizer")

Install from Github:
library("remotes")
install_github("cran/mizer")

Install by package version:
library("remotes")
install_version("mizer", "2.5.1")



Attach the package and use:
library("mizer")
Maintained by
Gustav Delius
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2013-10-08
Latest Update: 2023-12-08
Description:
A set of classes and methods to set up and run multi-species, trait based and community size spectrum ecological models, focused on the marine environment.
How to cite:
Gustav Delius (2013). mizer: Dynamic Multi-Species Size Spectrum Modelling. R package version 2.5.1, https://cran.r-project.org/web/packages/mizer
Previous versions and publish date:
0.1 (2013-10-08 17:46), 0.2 (2014-04-16 22:29), 0.4 (2017-12-14 19:26), 1.0.1 (2019-01-27 23:42), 1.0 (2018-05-02 13:21), 2.0.0 (2020-04-04 12:10), 2.0.1 (2020-05-05 21:50), 2.0.2 (2020-06-08 17:30), 2.0.3 (2020-07-28 16:30), 2.0.4 (2020-08-30 08:40), 2.1.0 (2021-03-21 16:50), 2.2.0 (2021-06-24 06:20), 2.2.1 (2021-08-03 10:10), 2.3.0.1 (2021-09-15 10:40), 2.3.0 (2021-09-11 16:30), 2.3.1 (2022-07-06 11:30), 2.4.0 (2022-12-23 09:10), 2.4.1 (2023-04-26 13:10), 2.5.0 (2023-12-08 14:00)
Other packages that cited mizer R package
View mizer citation profile
Other R packages that mizer depends, imports, suggests or enhances
Functions, R codes and Examples using the mizer R package
Some associated functions: BevertonHoltRDD . MizerParams-class . MizerParams . MizerSim-class . MizerSim . N . NOther . NS_interaction . NS_params . NS_sim . NS_species_params . NS_species_params_gears . RickerRDD . SheperdRDD . addSpecies . age_mat . age_mat_vB . animateSpectra . box_pred_kernel . calibrateBiomass . calibrateNumber . calibrateYield . compareParams . completeSpeciesParams . constantEggRDI . constantRDD . constant_other . customFunction . default_pred_kernel_params . defaults_edition . different . distanceMaxRelRDI . distanceSSLogN . double_sigmoid_length . emptyParams . finalN . finalNOther . gear_params . getBiomass . getCommunitySlope . getComponent . getCriticalFeedingLevel . getDiet . getEGrowth . getERepro . getEReproAndGrowth . getESpawning . getEffort . getEncounter . getFMort . getFMortGear . getFeedingLevel . getGrowthCurves . getInteraction . getM2 . getM2Background . getMeanMaxWeight . getMeanWeight . getMort . getN . getParams . getPhiPrey . getPredMort . getPredRate . getProportionOfLargeFish . getRDD . getRDI . getRates . getReproductionLevel . getResourceDynamics . getResourceMort . getSSB . getTimes . getYield . getYieldGear . getZ . get_f0_default . get_gamma_default . get_h_default . get_initial_n . get_ks_default . get_phi . get_required_reproduction . get_size_range_array . get_time_elements . idxFinalT . indicator_functions . initialN-set . initialNOther-set . initialNResource-set . initial_effort . inter . knife_edge . l2w . log_breaks . lognormal_pred_kernel . matchBiomasses . matchGrowth . matchNumbers . matchYields . mizer-package . mizerEGrowth . mizerERepro . mizerEReproAndGrowth . mizerEncounter . mizerFMort . mizerFMortGear . mizerFeedingLevel . mizerMort . mizerPredMort . mizerPredRate . mizerRDI . mizerRates . mizerResourceMort . needs_upgrading . newCommunityParams . newMultispeciesParams . newSingleSpeciesParams . newTraitParams . noRDD . plotBiomass . plotBiomassObservedVsModel . plotDataFrame . plotDiet . plotFMort . plotFeedingLevel . plotGrowthCurves . plotM2 . plotMizerSim . plotPredMort . plotSpectra . plotYield . plotYieldGear . plotYieldObservedVsModel . plotting_functions . power_law_pred_kernel . project . projectToSteady . project_simple . reexports . removeSpecies . renameSpecies . resource_constant . resource_logistic . resource_params . resource_semichemostat . saveParams . scaleModel . setBevertonHolt . setColours . setComponent . setExtEncounter . setExtMort . setFishing . setInitialValues . setInteraction . setMaxIntakeRate . setMetabolicRate . setMetadata . setParams . setPredKernel . setRateFunction . setReproduction . setResource . setRmax . setSearchVolume . set_community_model . set_multispecies_model . set_species_param_default . set_trait_model . sigmoid_length . sigmoid_weight . species_params . steady . steadySingleSpecies . summary-MizerParams-method . summary-MizerSim-method . summary_functions . truncated_lognormal_pred_kernel . upgradeParams . upgradeSim . validGearParams . validParams . validSpeciesParams . valid_species_arg . w . 
Some associated R codes: MizerParams-class.R . MizerSim-class.R . RcppExports.R . age_mat.R . animateSpectra.R . calibrate.R . compareParams.R . customFunction.R . data.R . defaults_edition.R . deprecated.R . extension.R . get_initial_n.R . helpers.R . manipulate_species.R . match.R . matchGrowth.R . mizer-package.R . newMultispeciesParams.R . newSingleSpeciesParams.R . plotBiomassObservedVsModel.R . plotYieldObservedVsModel.R . plots.R . pred_kernel_funcs.R . project.R . project_methods.R . rate_functions.R . reproduction.R . resource_dynamics.R . resource_logistic.R . resource_semichemostat.R . saveParams.R . selectivity_funcs.R . setBevertonHolt.R . setColours.R . setExtEncounter.R . setExtMort.R . setFishing.R . setInitialValues.R . setInteraction.R . setMaxIntakeRate.R . setMetabolicRate.R . setMetadata.R . setPredKernel.R . setReproduction.R . setResource.R . setSearchVolume.R . species_params.R . steady.R . steadySingleSpecies.R . summary_methods.R . upgrade.R . wrapper_functions.R .  Full mizer package functions and examples
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