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mixtree  

A Statistical Framework for Comparing Sets of Trees
View on CRAN: Click here


Download and install mixtree package within the R console
Install from CRAN:
install.packages("mixtree")

Install from Github:
library("remotes")
install_github("cran/mixtree")

Install by package version:
library("remotes")
install_version("mixtree", "0.0.1")



Attach the package and use:
library("mixtree")
Maintained by
Cyril Geismar
[Scholar Profile | Author Map]
First Published: 2025-03-05
Latest Update: 2025-03-05
Description:
Statistical framework for comparing sets of trees using hypothesis testing methods. Designed for transmission trees, phylogenetic trees, and directed acyclic graphs (DAGs), the package implements chi-squared tests to compare edge frequencies between sets and PERMANOVA to analyse topological dissimilarities with customisable distance metrics, following Anderson (2001) <doi:10.1111/j.1442-9993.2001.01070.pp.x>.
How to cite:
Cyril Geismar (2025). mixtree: A Statistical Framework for Comparing Sets of Trees. R package version 0.0.1, https://cran.r-project.org/web/packages/mixtree. Accessed 01 May. 2025.
Previous versions and publish date:
No previous versions
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View mixtree citation profile
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Complete documentation for mixtree
Functions, R codes and Examples using the mixtree R package
Full mixtree package functions and examples
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