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misha  

Toolkit for Analysis of Genomic Data
View on CRAN: Click here


Download and install misha package within the R console
Install from CRAN:
install.packages("misha")

Install from Github:
library("remotes")
install_github("cran/misha")

Install by package version:
library("remotes")
install_version("misha", "4.2.9")



Attach the package and use:
library("misha")
Maintained by
Aviezer Lifshitz
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2023-09-05
Latest Update: 2024-01-15
Description:
A toolkit for analysis of genomic data. The 'misha' package implements an efficient data structure for storing genomic data, and provides a set of functions for data extraction, manipulation and analysis. Some of the 2D genome algorithms were described in Yaffe and Tanay (2011) .
How to cite:
Aviezer Lifshitz (2023). misha: Toolkit for Analysis of Genomic Data. R package version 4.2.9, https://cran.r-project.org/web/packages/misha
Previous versions and publish date:
4.2.3 (2023-09-05 18:30), 4.2.6 (2023-09-14 11:10), 4.2.8 (2023-12-05 16:20), 4.2.9 (2024-01-15 11:30)
Other packages that cited misha R package
View misha citation profile
Other R packages that misha depends, imports, suggests or enhances
Functions, R codes and Examples using the misha R package
Some associated functions: dot-misha . gbins.quantiles . gbins.summary . gcis_decay . gcluster.run . gcompute_strands_autocorr . gdb.create . gdb.get_readonly_attrs . gdb.init . gdb.reload . gdb.set_readonly_attrs . gdir.cd . gdir.create . gdir.cwd . gdir.rm . gdist . gextract . gintervals.2d.all . gintervals.2d.band_intersect . gintervals.2d . gintervals.all . gintervals.canonic . gintervals.chrom_sizes . gintervals.diff . gintervals.exists . gintervals.force_range . gintervals.import_genes . gintervals.intersect . gintervals.is.bigset . gintervals.liftover . gintervals.load . gintervals.load_chain . gintervals.ls . gintervals.mapply . gintervals.neighbors . gintervals . gintervals.quantiles . gintervals.rbind . gintervals.rm . gintervals.save . gintervals.summary . gintervals.union . gintervals.update . giterator.cartesian_grid . giterator.intervals . glookup . gpartition . gquantiles . gsample . gscreen . gsegment . gseq.extract . gsummary . gtrack.2d.create . gtrack.2d.import . gtrack.2d.import_contacts . gtrack.array.extract . gtrack.array.get_colnames . gtrack.array.import . gtrack.array.set_colnames . gtrack.attr.export . gtrack.attr.get . gtrack.attr.import . gtrack.attr.set . gtrack.convert . gtrack.create . gtrack.create_dirs . gtrack.create_pwm_energy . gtrack.create_sparse . gtrack.exists . gtrack.import . gtrack.import_mappedseq . gtrack.import_set . gtrack.info . gtrack.liftover . gtrack.lookup . gtrack.ls . gtrack.modify . gtrack.rm . gtrack.smooth . gtrack.var.get . gtrack.var.ls . gtrack.var.rm . gtrack.var.set . gvtrack.array.slice . gvtrack.create . gvtrack.info . gvtrack.iterator.2d . gvtrack.iterator . gvtrack.ls . gvtrack.rm . gwget . gwilcox . misha-package . pipe . 
Some associated R codes: compute.R . db.R . ftp.R . intervals.R . misha-package.R . track-2d.R . track-array.R . track-attr.R . track-var.R . track.R . utils-pipe.R . utils.R . vtrack.R . zzz.R .  Full misha package functions and examples
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