Other packages > Find by keyword >

minimapR  

Wrapper for 'minimap2'
View on CRAN: Click here


Download and install minimapR package within the R console
Install from CRAN:
install.packages("minimapR")

Install from Github:
library("remotes")
install_github("cran/minimapR")

Install by package version:
library("remotes")
install_version("minimapR", "0.0.1.3")



Attach the package and use:
library("minimapR")
Maintained by
Jake Reed
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-07-21
Latest Update:
Description:
Wrapper for 'Minimap2'. 'Minimap2' is a very valuable long read aligner for the Pacbio and Oxford Nanopore Technologies sequencing platforms. 'minimapR' is an R wrapper for 'minimap2' which was developed by Heng Li <me@liheng.org>. *SPECIAL NOTES 1. Examples can only be run from 'GitHub' installation. 2. If using a Windows operating system, installation of the 'MSYS2' Linux emulator is required. 3. If using a Mac operating system, installation of 'Homebrew' is required. Li, Heng (2018) <doi:10.1093/bioinformatics/bty191> "Minimap2: pairwise alignment for nucleotide sequences".
How to cite:
Jake Reed (2024). minimapR: Wrapper for 'minimap2'. R package version 0.0.1.3, https://cran.r-project.org/web/packages/minimapR. Accessed 30 Jul. 2026.
Previous versions and publish date:
(2026-07-09 06:30), 0.0.1.0 (2024-07-21 12:10), 0.0.1.1 (2025-03-30 18:10), 0.0.1.3 (2025-04-09 09:40)
Other packages that cited minimapR R package
View minimapR citation profile
Other R packages that minimapR depends, imports, suggests or enhances
Complete documentation for minimapR
Functions, R codes and Examples using the minimapR R package
Full minimapR package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

SRCS  
Statistical Ranking Color Scheme for Multiple Pairwise Comparisons
Implementation of the SRCS method for a color-based visualization of the results of multiple pairwis ...
Download / Learn more Package Citations See dependency  
RolWinMulCor  
Subroutines to Estimate Rolling Window Multiple Correlation
Rolling Window Multiple Correlation ('RolWinMulCor') estimates the rolling (running) window correlat ...
Download / Learn more Package Citations See dependency  
extremefit  
Estimation of Extreme Conditional Quantiles and Probabilities
Extreme value theory, nonparametric kernel estimation, tail conditional probabilities, extreme cond ...
Download / Learn more Package Citations See dependency  
bootUR  
Bootstrap Unit Root Tests
Set of functions to perform various bootstrap unit root tests for both individual time series (incl ...
Download / Learn more Package Citations See dependency  
radiant.data  
Data Menu for Radiant: Business Analytics using R and Shiny
The Radiant Data menu includes interfaces for loading, saving, viewing, visualizing, summarizing, t ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  

27,987

R Packages

239,283

Dependencies

74,234

Author Associations

27,988

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA