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minimapR  

Wrapper for 'minimap2'
View on CRAN: Click here


Download and install minimapR package within the R console
Install from CRAN:
install.packages("minimapR")

Install from Github:
library("remotes")
install_github("cran/minimapR")

Install by package version:
library("remotes")
install_version("minimapR", "0.0.1.0")



Attach the package and use:
library("minimapR")
Maintained by
Jake Reed
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-07-21
Latest Update: 2024-07-21
Description:
Wrapper for 'Minimap2'. 'Minimap2' is a very valuable long read aligner for the Pacbio and Oxford Nanopore Technologies sequencing platforms. 'minimapR' is an R wrapper for 'minimap2' which was developed by Heng Li <me@liheng.org>. *SPECIAL NOTES 1. Examples can only be run from 'GitHub' installation. 2. If using a Windows operating system, installation of the 'MSYS2' Linux emulator is required. 3. If using a Mac operating system, installation of 'Homebrew' is required. Li, Heng (2018) <doi:10.1093/bioinformatics/bty191> "Minimap2: pairwise alignment for nucleotide sequences".
How to cite:
Jake Reed (2024). minimapR: Wrapper for 'minimap2'. R package version 0.0.1.0, https://cran.r-project.org/web/packages/minimapR. Accessed 23 Nov. 2024.
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