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microseq  

Basic Biological Sequence Handling
View on CRAN: Click here


Download and install microseq package within the R console
Install from CRAN:
install.packages("microseq")

Install from Github:
library("remotes")
install_github("cran/microseq")

Install by package version:
library("remotes")
install_version("microseq", "2.1.7")



Attach the package and use:
library("microseq")
Maintained by
Lars Snipen
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2016-07-27
Latest Update: 2025-09-03
Description:
Basic functions for microbial sequence data analysis. The idea is to use generic R data structures as much as possible, making R data wrangling possible also for sequence data.
How to cite:
Lars Snipen (2016). microseq: Basic Biological Sequence Handling. R package version 2.1.7, https://cran.r-project.org/web/packages/microseq. Accessed 13 Mar. 2026.
Previous versions and publish date:
1.0 (2016-07-27 03:49), 1.2.1 (2018-02-07 17:21), 1.2.2 (2018-02-12 16:27), 1.2.3 (2019-07-11 15:53), 1.2 (2017-01-13 15:40), 1.3 (2019-10-27 13:20), 2.0 (2020-01-09 14:00), 2.1.1 (2020-06-04 12:10), 2.1.2 (2020-07-05 06:50), 2.1.4 (2021-01-25 23:00), 2.1.5 (2021-10-30 14:50), 2.1.6 (2023-08-21 13:40), 2.1 (2020-05-29 15:30)
Other packages that cited microseq R package
View microseq citation profile
Other R packages that microseq depends, imports, suggests or enhances
Complete documentation for microseq
Functions, R codes and Examples using the microseq R package
Some associated functions: backTranslate . findGenes . findOrfs . findrRNA . gff2fasta . gregexpr . iupac2regex . lorfs . microseq-package . msa2mat . msaTrim . msalign . muscle . orfLength . orfSignature . readFasta . readFastq . readGFF . reverseComplement . translate . 
Some associated R codes: RcppExports.R . dnaManipulate.R . external.R . fasta.R . fastq.R . gff.R . microseq-package.R . multialign.R . orfs.R . utilityfun.R .  Full microseq package functions and examples
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