Other packages > Find by keyword >

microdiluteR  

Analysis of Broth Microdilution Assays
View on CRAN: Click here


Download and install microdiluteR package within the R console
Install from CRAN:
install.packages("microdiluteR")

Install from Github:
library("remotes")
install_github("cran/microdiluteR")

Install by package version:
library("remotes")
install_version("microdiluteR", "1.0.1")



Attach the package and use:
library("microdiluteR")
Maintained by
Silvia Eckert
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-05-13
Latest Update: 2024-05-13
Description:
A framework for analyzing broth microdilution assays in various 96-well plate designs, visualizing results and providing descriptive and (simple) inferential statistics (i.e. summary statistics and sign test). The functions are designed to add metadata to 8 x 12 tables of absorption values, creating a tidy data frame. Users can choose between clean-up procedures via function parameters (which covers most cases) or user prompts (in cases with complex experimental designs). Users can also choose between two validation methods, i.e. exclusion of absorbance values above a certain threshold or manual exclusion of samples. A function for visual inspection of samples with their absorption values over time for certain group combinations helps with the decision. In addition, the package includes functions to subtract the background absorption (usually at time T0) and to calculate the growth performance compared to a baseline. Samples can be visually inspected with their absorption values displayed across time points for specific group combinations. Core functions of this package (i.e. background subtraction, sample validation and statistics) were inspired by the manual calculations that were applied in Tewes and Muller (2020) <doi:10.1038/s41598-020-67600-7>.
How to cite:
Silvia Eckert (2024). microdiluteR: Analysis of Broth Microdilution Assays. R package version 1.0.1, https://cran.r-project.org/web/packages/microdiluteR. Accessed 08 Oct. 2026.
Previous versions and publish date:
(2026-07-18 05:13), 1.0.1 (2024-05-13 13:23)
Other packages that cited microdiluteR R package
View microdiluteR citation profile
Other R packages that microdiluteR depends, imports, suggests or enhances
Complete documentation for microdiluteR
Functions, R codes and Examples using the microdiluteR R package
Full microdiluteR package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

colorfindr  
Extract Colors from Windows BMP, JPEG, PNG, TIFF, and SVG Format Images
Extracts colors from various image types, returns customized reports and plots treemaps and 3D scat ...
Download / Learn more Package Citations See dependency  
dineR  
Differential Network Estimation in R
An efficient and convenient set of functions to perform differential network estimation through the ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
metafor  
Meta-Analysis Package for R
A comprehensive collection of functions for conducting meta-analyses in R. The package includes func ...
Download / Learn more Package Citations See dependency  
abc.data  
Data Only: Tools for Approximate Bayesian Computation (ABC)
Contains data which are used by functions of the 'abc' package. ...
Download / Learn more Package Citations See dependency  
climwin  
Climate Window Analysis
Contains functions to detect and visualise periods of climate sensitivity (climate windows) for a g ...
Download / Learn more Package Citations See dependency  

28,905

R Packages

247,686

Dependencies

76,495

Author Associations

28,906

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA