Other packages > Find by keyword >

microdiluteR  

Analysis of Broth Microdilution Assays
View on CRAN: Click here


Download and install microdiluteR package within the R console
Install from CRAN:
install.packages("microdiluteR")

Install from Github:
library("remotes")
install_github("cran/microdiluteR")

Install by package version:
library("remotes")
install_version("microdiluteR", "1.0.1")



Attach the package and use:
library("microdiluteR")
Maintained by
Silvia Eckert
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-05-13
Latest Update: 2024-05-13
Description:
A framework for analyzing broth microdilution assays in various 96-well plate designs, visualizing results and providing descriptive and (simple) inferential statistics (i.e. summary statistics and sign test). The functions are designed to add metadata to 8 x 12 tables of absorption values, creating a tidy data frame. Users can choose between clean-up procedures via function parameters (which covers most cases) or user prompts (in cases with complex experimental designs). Users can also choose between two validation methods, i.e. exclusion of absorbance values above a certain threshold or manual exclusion of samples. A function for visual inspection of samples with their absorption values over time for certain group combinations helps with the decision. In addition, the package includes functions to subtract the background absorption (usually at time T0) and to calculate the growth performance compared to a baseline. Samples can be visually inspected with their absorption values displayed across time points for specific group combinations. Core functions of this package (i.e. background subtraction, sample validation and statistics) were inspired by the manual calculations that were applied in Tewes and Muller (2020) <doi:10.1038/s41598-020-67600-7>.
How to cite:
Silvia Eckert (2024). microdiluteR: Analysis of Broth Microdilution Assays. R package version 1.0.1, https://cran.r-project.org/web/packages/microdiluteR. Accessed 22 Dec. 2024.
Previous versions and publish date:
No previous versions
Other packages that cited microdiluteR R package
View microdiluteR citation profile
Other R packages that microdiluteR depends, imports, suggests or enhances
Complete documentation for microdiluteR
Functions, R codes and Examples using the microdiluteR R package
Full microdiluteR package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

elect  
Estimation of Life Expectancies Using Multi-State Models
Functions to compute state-specific and marginal life expectancies. The computation is based on a fi ...
Download / Learn more Package Citations See dependency  
dmlalg  
Double Machine Learning Algorithms
Implementation of double machine learning (DML) algorithms in R, based on Emmenegger and Buehlmann ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
wordspace  
Distributional Semantic Models in R
An interactive laboratory for research on distributional semantic models ('DSM', see < ...
Download / Learn more Package Citations See dependency  
Rfast2  
A Collection of Efficient and Extremely Fast R Functions II
A collection of fast statistical and utility functions for data analysis. Functions for regression, ...
Download / Learn more Package Citations See dependency  
tropAlgebra  
Tropical Algebraic Functions
It includes functions like tropical addition, tropical multiplication for vectors and matrices. In t ...
Download / Learn more Package Citations See dependency  

23,394

R Packages

201,798

Dependencies

63,416

Author Associations

23,395

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA