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microSTASIS  

Microbiota STability ASsessment via Iterative cluStering
View on CRAN: Click here


Download and install microSTASIS package within the R console
Install from CRAN:
install.packages("microSTASIS")

Install from Github:
library("remotes")
install_github("cran/microSTASIS")

Install by package version:
library("remotes")
install_version("microSTASIS", "0.1.0")



Attach the package and use:
library("microSTASIS")
Maintained by
Pedro Snchez-Snchez
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-09-14
Latest Update: 2023-04-27
Description:
The toolkit STASIS has been developed for the stability analysis of microbiota in a temporal framework by leveraging on iterative clustering. Concretely the core function uses Hartigan-Wong k-means algorithm as many times as possible for stressing out paired samples from the same individuals to test if they remain together for multiple numbers of clusters over a whole data set of individuals. Moreover the package includes multiple functions to subset samples from paired times validate the results or visualize the output.
How to cite:
Pedro Snchez-Snchez (2021). microSTASIS: Microbiota STability ASsessment via Iterative cluStering. R package version 0.1.0, https://cran.r-project.org/web/packages/microSTASIS. Accessed 21 Dec. 2024.
Previous versions and publish date:
0.1.0 (2021-09-14 08:40)
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