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microSTASIS
View on CRAN: Click
here
Download and install microSTASIS package within the R console
Install from CRAN:
install.packages("microSTASIS")
Install from Github:
library("remotes")
install_github("cran/microSTASIS")
Install by package version:
library("remotes")
install_version("microSTASIS", "0.1.0")
Attach the package and use:
library("microSTASIS")
Maintained by
Pedro Snchez-Snchez
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-09-14
Latest Update: 2023-04-27
Description:
The toolkit STASIS has been developed for the stability analysis of microbiota in a temporal framework by leveraging on iterative clustering. Concretely the core function uses Hartigan-Wong k-means algorithm as many times as possible for stressing out paired samples from the same individuals to test if they remain together for multiple numbers of clusters over a whole data set of individuals. Moreover the package includes multiple functions to subset samples from paired times validate the results or visualize the output.
How to cite:
Pedro Snchez-Snchez (2021). microSTASIS: Microbiota STability ASsessment via Iterative cluStering. R package version 0.1.0, https://cran.r-project.org/web/packages/microSTASIS. Accessed 21 Dec. 2024.
Previous versions and publish date:
0.1.0 (2021-09-14 08:40)
Other packages that cited microSTASIS R package
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Other R packages that microSTASIS depends,
imports, suggests or enhances
Functions, R codes and Examples using
the microSTASIS R package
Some associated functions: CV_iterative_clustering . CV_results . clr . iterative_clustering . metadata_groups . paired_times . pre_radarPC . radarPC . st_evolution . st_heatmap . st_previz . st_scatter . stabilitas .
Some associated R codes: CV_iterative_clustering.R . CV_results.R . data.R . iterative_clustering.R . metadata_groups.R . paired_times.R . pre_radarPC.R . radarPC.R . st_evolution.R . st_heatmap.R . st_previz.R . st_scatter.R . stabilitas.R . Full microSTASIS package functions and examples
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