Other packages > Find by keyword >

miRetrieve  

miRNA Text Mining in Abstracts
View on CRAN: Click here


Download and install miRetrieve package within the R console
Install from CRAN:
install.packages("miRetrieve")

Install from Github:
library("remotes")
install_github("cran/miRetrieve")

Install by package version:
library("remotes")
install_version("miRetrieve", "1.3.4")



Attach the package and use:
library("miRetrieve")
Maintained by
Julian Friedrich
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-07-15
Latest Update: 2021-09-18
Description:
Providing tools for microRNA (miRNA) text mining. miRetrieve summarizes miRNA literature by extracting, counting, and analyzing miRNA names, thus aiming at gaining biological insights into a large amount of text within a short period of time. To do so, miRetrieve uses regular expressions to extract miRNAs and tokenization to identify meaningful miRNA associations. In addition, miRetrieve uses the latest miRTarBase version 8.0 (Hsi-Yuan Huang et al. (2020) "miRTarBase 2020: updates to the experimentally validated microRNA
How to cite:
Julian Friedrich (2021). miRetrieve: miRNA Text Mining in Abstracts. R package version 1.3.4, https://cran.r-project.org/web/packages/miRetrieve. Accessed 12 Oct. 2026.
Previous versions and publish date:
(2026-07-09 06:30), 1.3.0 (2021-07-15 13:30), 1.3.2 (2021-08-13 09:30), 1.3.4 (2021-09-18 19:30)
Other packages that cited miRetrieve R package
View miRetrieve citation profile
Other R packages that miRetrieve depends, imports, suggests or enhances
Complete documentation for miRetrieve
Functions, R codes and Examples using the miRetrieve R package
Some associated functions: add_col_topic . animal_keywords . assign_topic . assign_topic_lda . biomarker_keywords . calculate_score_animals . calculate_score_biomarker . calculate_score_patients . calculate_score_topic . combine_df . combine_mir . combine_stopwords . compare_mir_count . compare_mir_count_log2 . compare_mir_count_unique . compare_mir_terms . compare_mir_terms_log2 . compare_mir_terms_scatter . compare_mir_terms_unique . count_mir . count_mir_threshold . count_snp . count_target . df_crc . df_mirtarbase . df_panc . df_test . extract_mir_df . extract_mir_string . extract_snp . fit_lda . generate_stopwords . get_distinct_mir_df . get_distinct_mir_vec . get_mir . get_pmid . get_shared_mir_df . get_shared_mir_vec . get_snp . indicate_mir . indicate_term . join_mirtarbase . join_targets . ngram_stopwords . patients_keywords . plot_lda_term . plot_mir_count . plot_mir_count_threshold . plot_mir_development . plot_mir_new . plot_mir_terms . plot_perplexity . plot_score_animals . plot_score_biomarker . plot_score_patients . plot_score_topic . plot_target_count . plot_target_mir_scatter . plot_wordcloud . read_pubmed . read_pubmed_jats . save_excel . save_plot . stopwords_2gram . stopwords_miretrieve . stopwords_pubmed . subset_df . subset_mir . subset_mir_threshold . subset_research . subset_review . subset_snp . subset_year . 
Some associated R codes: animals_score.R . assign_topic.R . biomarker_score.R . combine_mir.R . compare_mir_count.R . compare_mir_terms.R . count_mir_perc_total_threshold_helper.R . count_mir_single_topic.R . count_mir_threshold.R . detect_single_term.R . df_crc.R . df_mirtarbase.R . df_operations_combine_addtopic_subsetmir.R . df_panc.R . df_test.R . distinct_shared_mir.R . extract_mir.R . generate_stopwords.R . get_mir_vec.R . get_pmid.R . globals.R . helper_calculate_score.R . helper_control_shared_mir.R . join_mirtarbase.R . join_targets.R . lda_miretrieve.R . load_and_save_files.R . mirna_year_new_and_trend.R . patients_score.R . polymorphism.R . prepare_make_dtm_helper.R . pretty_breaks_helper.R . self_made_topics.R . stopwords_doc.R . stopwords_ngram_roxygen.R . subset_articles_review_year.R . subset_mir.R . target_mirna.R . tfidf_words.R . top_words_count_words_helper.R . wordcloud.R .  Full miRetrieve package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

cglasso  
Conditional Graphical LASSO for Gaussian Graphical Models with Censored and Missing Values
Conditional graphical lasso estimator is an extension of the graphical lasso proposed to estimate th ...
Download / Learn more Package Citations See dependency  
SLEMI  
Statistical Learning Based Estimation of Mutual Information
The implementation of the algorithm for estimation of mutual information and channel capacity from e ...
Download / Learn more Package Citations See dependency  
ggparliament  
Parliament Plots
Simple parliament plots using 'ggplot2'. Visualize election results as points in the architectural l ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
gwavr  
Get Water Attributes Visually in R
Provides methods to Get Water Attributes Visually in R ('gwavr'). This allows the user to point and ...
Download / Learn more Package Citations See dependency  

29,000

R Packages

247,686

Dependencies

76,729

Author Associations

29,001

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA