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mhcnuggetsr  

Call MHCnuggets
View on CRAN: Click here


Download and install mhcnuggetsr package within the R console
Install from CRAN:
install.packages("mhcnuggetsr")

Install from Github:
library("remotes")
install_github("cran/mhcnuggetsr")

Install by package version:
library("remotes")
install_version("mhcnuggetsr", "1.1")



Attach the package and use:
library("mhcnuggetsr")
Maintained by
Richèl J.C. Bilderbeek
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-11-04
Latest Update: 2020-11-04
Description:
MHCnuggets () is a Python tool to predict MHC class I and MHC class II epitopes. This package allows one to call MHCnuggets from R.
How to cite:
Richèl J.C. Bilderbeek (2020). mhcnuggetsr: Call MHCnuggets. R package version 1.1, https://cran.r-project.org/web/packages/mhcnuggetsr. Accessed 22 Dec. 2024.
Previous versions and publish date:
No previous versions
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View mhcnuggetsr citation profile
Other R packages that mhcnuggetsr depends, imports, suggests or enhances
Complete documentation for mhcnuggetsr
Functions, R codes and Examples using the mhcnuggetsr R package
Some associated functions: are_mhcnuggets_names . check_mhc_class . check_mhcnuggets_installation . check_mhcnuggets_options . check_mhcnuggets_options_names . create_mhcnuggets_options . create_temp_peptides_path . create_test_mhcnuggets_options . default_params_doc . downgrade_pip . get_default_mhcnuggets_folder . get_example_filename . get_example_filenames . get_mhc_1_haplotypes . get_mhc_2_haplotypes . get_mhcnuggets_url . get_mhcnuggets_version . get_pip_version . get_python_package_versions . get_trained_mhc_1_haplotypes . get_trained_mhc_2_haplotypes . install_mhcnuggets . install_pip . is_mhcnuggets_installed . is_mhcnuggets_name . is_mhcnuggets_options . is_on_appveyor . is_on_ci . is_on_travis . is_pip_installed . mhcnuggetsr . mhcnuggetsr_report . mhcnuggetsr_self_test . predict_ic50 . predict_ic50_from_file . predict_ic50s . set_is_mhcnuggets_installed . set_pip_version . to_mhcnuggets_name . to_mhcnuggets_names . uninstall_mhcnuggets . uninstall_pip . upgrade_pip . 
Some associated R codes: are_mhcnuggets_names.R . check_mhc_class.R . check_mhcnuggets_installation.R . check_mhcnuggets_options.R . create_mhcnuggets_options.R . create_temp_peptides_path.R . create_test_mhcnuggets_options.R . default_params_doc.R . downgrade_pip.R . get_default_mhcnuggets_folder.R . get_example_filename.R . get_example_filenames.R . get_mhc_1_haplotypes.R . get_mhc_2_haplotypes.R . get_mhcnuggets_url.R . get_mhcnuggets_version.R . get_pip_version.R . get_python_package_versions.R . get_trained_mhc_1_haplotypes.R . get_trained_mhc_2_haplotypes.R . install_mhcnuggets.R . install_pip.R . is_mhcnuggets_installed.R . is_mhcnuggets_name.R . is_mhcnuggets_options.R . is_on_ci.R . is_pip_installed.R . mhcnuggetsr.R . mhcnuggetsr_report.R . mhcnuggetsr_self_test.R . predict_ic50.R . predict_ic50_from_file.R . predict_ic50s.R . set_is_mhcnuggets_installed.R . set_pip_version.R . to_mhcnuggets_name.R . to_mhcnuggets_names.R . uninstall_mhcnuggets.R . uninstall_pip.R . upgrade_pip.R .  Full mhcnuggetsr package functions and examples
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