Other packages > Find by keyword >

methFuse  

Functional Segmentation of the Methylome
View on CRAN: Click here


Download and install methFuse package within the R console
Install from CRAN:
install.packages("methFuse")

Install from Github:
library("remotes")
install_github("cran/methFuse")

Install by package version:
library("remotes")
install_version("methFuse", "1.1.0")



Attach the package and use:
library("methFuse")
Maintained by
Susanna Holmström
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2026-03-04
Latest Update: 2026-03-04
Description:
Implements FUSE (Functional Segmentation of DNA methylation data), a data-driven method for identifying spatially coherent DNA methylation segments from whole-genome bisulfite sequencing (WGBS) count data. The method performs hierarchical clustering of CpG sites based on methylated and unmethylated read counts across multiple samples and determines the optimal number of segments using an information criterion (AIC or BIC). Resulting segments represent regions with homogeneous methylation profiles across the input cohort while allowing sample-specific methylation levels. The package provides functions for clustering, model selection, tree cutting, segment-level summarization, and visualization. Input can be supplied as count matrices or extracted directly from 'BSseq' and 'methrix' objects.
How to cite:
Susanna Holmström (2026). methFuse: Functional Segmentation of the Methylome. R package version 1.1.0, https://cran.r-project.org/web/packages/methFuse. Accessed 14 Mar. 2026.
Previous versions and publish date:
No previous versions
Other packages that cited methFuse R package
View methFuse citation profile
Other R packages that methFuse depends, imports, suggests or enhances
Complete documentation for methFuse
Functions, R codes and Examples using the methFuse R package
Full methFuse package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

zoltr  
Interface to the 'Zoltar' Forecast Repository API
'Zoltar' <https://www.zoltardata.com/> ...
Download / Learn more Package Citations See dependency  
prodigenr  
Research Project Directory Generator
Create a project directory structure, along with typical files for that project. This allows proje ...
Download / Learn more Package Citations See dependency  
easyDes  
An Easy Way to Descriptive Analysis
Descriptive analysis is essential for publishing medical articles. This package provides an easy ...
Download / Learn more Package Citations See dependency  
bioC.logs  
BioConductor Package Downloads Stats
Download stats reported from the BioConductor.org stats website. ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
serpstatr  
'Serpstat' API Wrapper
The primary goal of 'Serpstat' API is to reduce manual SEO (search engi ...
Download / Learn more Package Citations See dependency  

26,352

R Packages

225,784

Dependencies

70,526

Author Associations

26,294

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA