R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
methFuse
View on CRAN: Click
here
Download and install methFuse package within the R console
Install from CRAN:
install.packages("methFuse")
Install from Github:
library("remotes")
install_github("cran/methFuse") Install by package version:
library("remotes")
install_version("methFuse", "1.1.0") Attach the package and use:
library("methFuse")
Maintained by
Susanna Holmström
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2026-03-04
Latest Update: 2026-03-04
Description:
Implements FUSE (Functional Segmentation of DNA methylation data), a data-driven method for identifying spatially coherent DNA methylation segments from whole-genome bisulfite sequencing (WGBS) count data. The method performs hierarchical clustering of CpG sites based on methylated and unmethylated read counts across multiple samples and determines the optimal number of segments using an information criterion (AIC or BIC). Resulting segments represent regions with homogeneous methylation profiles across the input cohort while allowing sample-specific methylation levels. The package provides functions for clustering, model selection, tree cutting, segment-level summarization, and visualization. Input can be supplied as count matrices or extracted directly from 'BSseq' and 'methrix' objects.
How to cite:
Susanna Holmström (2026). methFuse: Functional Segmentation of the Methylome. R package version 1.1.0, https://cran.r-project.org/web/packages/methFuse. Accessed 06 Oct. 2026.
Previous versions and publish date:
No previous versions
Other packages that cited methFuse R package
View methFuse citation profile
Other R packages that methFuse depends,
imports, suggests or enhances
Complete documentation for methFuse
Functions, R codes and Examples using
the methFuse R package
Full methFuse package
functions and examples
Downloads during the last 30 days
Today's Hot Picks in Authors and Packages
gRim
Provides the following types of models: Models for contingency
tables (i.e. log-linear models) Grap ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Søren Højsgaard (view profile)
nextGenShinyApps
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Obinna Obianom (view profile)
gecko
Includes a collection of geographical analysis functions aimed primarily at ecology and conservation ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Vasco V. Branco (view profile)
28,905
R Packages
247,686
Dependencies
76,495
Author Associations
28,906
Publication Badges
