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metaGE
View on CRAN: Click
here
Download and install metaGE package within the R console
Install from CRAN:
install.packages("metaGE")
Install from Github:
library("remotes")
install_github("cran/metaGE") Install by package version:
library("remotes")
install_version("metaGE", "1.2.2") Attach the package and use:
library("metaGE")
Maintained by
Annaïg De Walsche
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2023-03-08
Latest Update: 2025-07-21
Description:
Meta-analysis of genome-wide association studies for studying
Genotype x Environment interactions. The 4 main functions of the
package metaGE.collect(), metaGE.cor(), metaGE.fit() and metaGE.test()
correspond to 4 steps to perform the meta-analysis: Collecting the
results of genome-wide association studies data from different files;
Inferring the inter-environment correlation matrix; Performing global
test procedure for quantitative trait loci detection (using a Fixed or
Random effect model); Performing tests of contrast or meta-regression
using an environmental co-factor. (De Walsche, A., et al. (2023)
).
How to cite:
Annaïg De Walsche (2023). metaGE: Meta-Analysis for Detecting Genotype x Environment Associations. R package version 1.2.2, https://cran.r-project.org/web/packages/metaGE. Accessed 01 Jul. 2026.
Previous versions and publish date:
Other packages that cited metaGE R package
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Other R packages that metaGE depends,
imports, suggests or enhances
Complete documentation for metaGE
Functions, R codes and Examples using
the metaGE R package
Some associated functions: CheckContrast . CheckIncidence . ContrastStatTest.NA . ContrastStatTest . FastKerFdr . GetH0Items . LLikelihoodT_vect . MakeQQplot . ReadData . RegressionStatTest . RegressionStatTestNA . autocor . envDesc . lindley . metaData . metaGE-package . metaGE.collect . metaGE.cor . metaGE.fit . metaGE.heatmap . metaGE.incidence . metaGE.lscore . metaGE.manhattan . metaGE.pvalplot . metaGE.regplot . metaGE.test . sig_sl . thresUnif .
Some associated R codes: data.R . metaGE-package.R . metaGEcollect.R . metaGEfit.R . metaGEmatcor.R . metaGEplot.R . metaGEscore.R . metaGEtest.R . Full metaGE package functions and examples
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