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medExtractR
View on CRAN: Click
here
Download and install medExtractR package within the R console
Install from CRAN:
install.packages("medExtractR")
Install from Github:
library("remotes")
install_github("cran/medExtractR")
Install by package version:
library("remotes")
install_version("medExtractR", "0.4.1")
Attach the package and use:
library("medExtractR")
Maintained by
Leena Choi
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-07-01
Latest Update: 2022-06-06
Description:
Function and support for medication and dosing information extraction from free-text clinical notes. Medication entities for the basic medExtractR implementation that can be extracted include drug name, strength, dose amount, dose, frequency, intake time, dose change, and time of last dose. The basic medExtractR is outlined in Weeks, Beck, McNeer, Williams, Bejan, Denny, Choi (2020) . The extended medExtractR_tapering implementation is intended to extract dosing information for more tapering schedules, which are far more complex. The tapering extension allows for the extraction of additional entities including dispense amount, refills, dose schedule, time keyword, transition, and preposition.
How to cite:
Leena Choi (2019). medExtractR: Extraction of Medication Information from Clinical Text. R package version 0.4.1, https://cran.r-project.org/web/packages/medExtractR
Previous versions and publish date:
Other packages that cited medExtractR R package
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Other R packages that medExtractR depends,
imports, suggests or enhances
Functions, R codes and Examples using
the medExtractR R package
Some associated functions: addl_expr . dosechange_vals . doseschedule_vals . duration_vals . entity_metadata . extract_entities . extract_entities_tapering . extract_generic . extract_lastdose . extract_type . frequency_vals . intaketime_vals . internal_censor_dates . internal_find_numbers . medExtractR-package . medExtractR . medExtractR_tapering . preposition_vals . replace_tab . route_vals . rxnorm_druglist . string_counts . string_occurs . string_suggestions . strings-internal . time_regex . timekeyword_vals . transition_vals .
Some associated R codes: addl_expr.R . dosechange_vals.R . doseschedule_vals.R . duration_vals.R . extract_entities.R . extract_entities_tapering.R . extract_generic.R . extract_lastdose.R . frequency_vals.R . intaketime_vals.R . medExtractR-package.R . medExtractR.R . medExtractR_tapering.R . preposition_vals.R . route_vals.R . rxnorm_druglist.R . string_counts.R . string_occurs.R . string_suggestions.R . string_utils.R . time_regex.R . timekeyword_vals.R . transition_vals.R . utils.R . Full medExtractR package functions and examples
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