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mecoturn  

Decipher Microbial Turnover along a Gradient
View on CRAN: Click here


Download and install mecoturn package within the R console
Install from CRAN:
install.packages("mecoturn")

Install from Github:
library("remotes")
install_github("cran/mecoturn")

Install by package version:
library("remotes")
install_version("mecoturn", "0.3.0")



Attach the package and use:
library("mecoturn")
Maintained by
Chi Liu
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2023-02-23
Latest Update: 2023-09-10
Description:
Two pipelines are provided to study microbial turnover along a gradient, including the beta diversity and microbial abundance change. The 'betaturn' class consists of the steps of community dissimilarity matrix generation, matrix conversion, differential test and visualization. The workflow of 'taxaturn' class includes the taxonomic abundance calculation, abundance transformation, abundance change summary, statistical analysis and visualization. Multiple statistical approaches can contribute to the analysis of microbial turnover.
How to cite:
Chi Liu (2023). mecoturn: Decipher Microbial Turnover along a Gradient. R package version 0.3.0, https://cran.r-project.org/web/packages/mecoturn. Accessed 22 Dec. 2024.
Previous versions and publish date:
0.1.0 (2023-02-23 15:12), 0.2.0 (2023-06-01 07:10)
Other packages that cited mecoturn R package
View mecoturn citation profile
Other R packages that mecoturn depends, imports, suggests or enhances
Complete documentation for mecoturn
Functions, R codes and Examples using the mecoturn R package
Some associated functions: betaturn . taxaturn . wheat_16S . 
Some associated R codes: betaturn.R . data.R . import.R . taxaturn.R .  Full mecoturn package functions and examples
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