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mclink  

Metabolic Pathway Completeness and Abundance Calculation
View on CRAN: Click here


Download and install mclink package within the R console
Install from CRAN:
install.packages("mclink")

Install from Github:
library("remotes")
install_github("cran/mclink")

Install by package version:
library("remotes")
install_version("mclink", "1.1.1")



Attach the package and use:
library("mclink")
Maintained by
Liuyang Li
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2025-08-22
Latest Update: 2025-08-22
Description:
Provides tools for analyzing metabolic pathway completeness, abundance, and transcripts using KEGG Orthology (KO) data from (meta)genomic and (meta)transcriptomic studies. Supports both completeness (presence/absence) and abundance-weighted analyses. Includes built-in KEGG reference datasets. For more details see Li et al. (2023) <doi:10.1038/s41467-023-42193-7>.
How to cite:
Liuyang Li (2025). mclink: Metabolic Pathway Completeness and Abundance Calculation. R package version 1.1.1, https://cran.r-project.org/web/packages/mclink. Accessed 26 Aug. 2026.
Previous versions and publish date:
(2026-07-20 10:00), 1.1.1 (2025-10-26 19:40), 1.1 (2025-08-22 20:20)
Other packages that cited mclink R package
View mclink citation profile
Other R packages that mclink depends, imports, suggests or enhances
Complete documentation for mclink
Functions, R codes and Examples using the mclink R package
Full mclink package functions and examples
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