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mbmixture  

Microbiome Mixture Analysis
View on CRAN: Click here


Download and install mbmixture package within the R console
Install from CRAN:
install.packages("mbmixture")

Install from Github:
library("remotes")
install_github("cran/mbmixture")

Install by package version:
library("remotes")
install_version("mbmixture", "0.6")



Attach the package and use:
library("mbmixture")
Maintained by
Karl W Broman
[Scholar Profile | Author Map]
First Published: 2020-10-22
Latest Update: 2023-04-27
Description:
Evaluate whether a microbiome sample is a mixture of two samples, by fitting a model for the number of read counts as a function of single nucleotide polymorphism (SNP) allele and the genotypes of two potential source samples. Lobo et al. (2021) .
How to cite:
Karl W Broman (2020). mbmixture: Microbiome Mixture Analysis. R package version 0.6, https://cran.r-project.org/web/packages/mbmixture. Accessed 29 Mar. 2025.
Previous versions and publish date:
0.2-5 (2020-10-22 11:10), 0.4 (2023-04-27 15:00)
Other packages that cited mbmixture R package
View mbmixture citation profile
Other R packages that mbmixture depends, imports, suggests or enhances
Complete documentation for mbmixture
Functions, R codes and Examples using the mbmixture R package
Some associated functions: bootstrapNull . bootstrapSE . mbmix_loglik . mbmixdata . mle_e . mle_p . mle_pe . 
Some associated R codes: bootstrapNull.R . bootstrapSE.R . cluster_util.R . mbmix_loglik.R . mbmixdata.R . mle_e.R . mle_p.R . mle_pe.R .  Full mbmixture package functions and examples
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