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mbX  

A Comprehensive Microbiome Data Processing Pipeline
View on CRAN: Click here


Download and install mbX package within the R console
Install from CRAN:
install.packages("mbX")

Install from Github:
library("remotes")
install_github("cran/mbX")

Install by package version:
library("remotes")
install_version("mbX", "0.2.0")



Attach the package and use:
library("mbX")
Maintained by
Utsav Lamichhane
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2025-03-03
Latest Update: 2025-07-23
Description:
Provides tools for cleaning, processing, and preparing microbiome sequencing data (e.g., 16S rRNA) for downstream analysis. Supports CSV, TXT, and 'Excel' file formats. The main function, ezclean(), automates microbiome data transformation, including format validation, transposition, numeric conversion, and metadata integration. Also ensures efficient handling of taxonomic levels, resolves duplicated taxa entries, and outputs a well-structured, analysis-ready dataset.
How to cite:
Utsav Lamichhane (2025). mbX: A Comprehensive Microbiome Data Processing Pipeline. R package version 0.2.0, https://cran.r-project.org/web/packages/mbX. Accessed 26 Jun. 2026.
Previous versions and publish date:
0.1.3 (2025-03-03 13:10)
Other packages that cited mbX R package
View mbX citation profile
Other R packages that mbX depends, imports, suggests or enhances
Complete documentation for mbX
Functions, R codes and Examples using the mbX R package
Full mbX package functions and examples
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