Other packages > Find by keyword >

manhattanly  

Interactive Q-Q and Manhattan Plots Using 'plotly.js'
View on CRAN: Click here


Download and install manhattanly package within the R console
Install from CRAN:
install.packages("manhattanly")

Install from Github:
library("remotes")
install_github("cran/manhattanly")

Install by package version:
library("remotes")
install_version("manhattanly", "0.3.0")



Attach the package and use:
library("manhattanly")
Maintained by
Sahir Bhatnagar
[Scholar Profile | Author Map]
First Published: 2016-06-08
Latest Update: 2021-04-26
Description:
Create interactive manhattan, Q-Q and volcano plots that are usable from the R console, in 'Dash' apps, in the 'RStudio' viewer pane, in 'R Markdown' documents, and in 'Shiny' apps. Hover the mouse pointer over a point to show details or drag a rectangle to zoom. A manhattan plot is a popular graphical method for visualizing results from high-dimensional data analysis such as a (epi)genome wide association study (GWAS or EWAS), in which p-values, Z-scores, test statistics are plotted on a scatter plot against their genomic position. Manhattan plots are used for visualizing potential regions of interest in the genome that are associated with a phenotype. Interactive manhattan plots allow the inspection of specific value (e.g. rs number or gene name) by hovering the mouse over a cell, as well as zooming into a region of the genome (e.g. a chromosome) by dragging a rectangle around the relevant area. This work is based on the 'qqman' package and the 'plotly.js' engine. It produces similar manhattan and Q-Q plots as the 'manhattan' and 'qq' functions in the 'qqman' package, with the advantage of including extra annotation information and interactive web-based visualizations directly from R. Once uploaded to a 'plotly' account, 'plotly' graphs (and the data behind them) can be viewed and modified in a web browser.
How to cite:
Sahir Bhatnagar (2016). manhattanly: Interactive Q-Q and Manhattan Plots Using 'plotly.js'. R package version 0.3.0, https://cran.r-project.org/web/packages/manhattanly. Accessed 04 Apr. 2025.
Previous versions and publish date:
0.1.0 (2016-06-08 17:52), 0.2.0 (2016-11-16 01:56)
Other packages that cited manhattanly R package
View manhattanly citation profile
Other R packages that manhattanly depends, imports, suggests or enhances
Complete documentation for manhattanly
Functions, R codes and Examples using the manhattanly R package
Some associated functions: HapMap . manhattanly . manhattanr . qqly . qqr . significantSNP . volcanoly . volcanor . 
Some associated R codes: HapMap-data.R . manhattanly.R . manhattanr.R . qqly.R . qqr.R . significantSNP-data.R . utils.R . volcanoly.R . volcanor.R . zzz.R .  Full manhattanly package functions and examples
Downloads during the last 30 days
03/0503/0603/0703/0803/0903/1003/1103/1203/1303/1403/1503/1603/1703/1803/1903/2003/2103/2203/2303/2403/2503/2603/2703/2803/2903/3003/3104/0104/0204/03Downloads for manhattanly051015202530TrendBars

Today's Hot Picks in Authors and Packages

Rexperigen  
R Interface to Experigen
Provides convenience functions to communicate with an Experigen server: Experigen ( ...
Download / Learn more Package Citations See dependency  
RMixpanel  
API for Mixpanel
Provides an interface to many endpoints of Mixpanel's Data Export, Engage and JQL API. The R functio ...
Download / Learn more Package Citations See dependency  
metaprotr  
Metaproteomics Post-Processing Analysis
Set of tools for descriptive analysis of metaproteomics data generated from high-throughput mass ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
PakPMICS2014HH  
Multiple Indicator Cluster Survey (MICS) 2014 Household Questionnaire Data for Punjab, Pakistan
Provides data set and function for exploration of Multiple Indicator Cluster Survey (MICS) 2014 Hous ...
Download / Learn more Package Citations See dependency  
perryExamples  
Examples for Integrating Prediction Error Estimation into Regression Models
Examples for integrating package 'perry' for prediction error estimation into regression models. ...
Download / Learn more Package Citations See dependency  

23,990

R Packages

207,311

Dependencies

64,809

Author Associations

23,991

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA