Other packages > Find by keyword >

manhattanly  

Interactive Q-Q and Manhattan Plots Using 'plotly.js'
View on CRAN: Click here


Download and install manhattanly package within the R console
Install from CRAN:
install.packages("manhattanly")

Install from Github:
library("remotes")
install_github("cran/manhattanly")

Install by package version:
library("remotes")
install_version("manhattanly", "0.3.0")



Attach the package and use:
library("manhattanly")
Maintained by
Sahir Bhatnagar
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2016-06-08
Latest Update:
Description:
Create interactive manhattan, Q-Q and volcano plots that are usable from the R console, in 'Dash' apps, in the 'RStudio' viewer pane, in 'R Markdown' documents, and in 'Shiny' apps. Hover the mouse pointer over a point to show details or drag a rectangle to zoom. A manhattan plot is a popular graphical method for visualizing results from high-dimensional data analysis such as a (epi)genome wide association study (GWAS or EWAS), in which p-values, Z-scores, test statistics are plotted on a scatter plot against their genomic position. Manhattan plots are used for visualizing potential regions of interest in the genome that are associated with a phenotype. Interactive manhattan plots allow the inspection of specific value (e.g. rs number or gene name) by hovering the mouse over a cell, as well as zooming into a region of the genome (e.g. a chromosome) by dragging a rectangle around the relevant area. This work is based on the 'qqman' package and the 'plotly.js' engine. It produces similar manhattan and Q-Q plots as the 'manhattan' and 'qq' functions in the 'qqman' package, with the advantage of including extra annotation information and interactive web-based visualizations directly from R. Once uploaded to a 'plotly' account, 'plotly' graphs (and the data behind them) can be viewed and modified in a web browser.
How to cite:
Sahir Bhatnagar (2016). manhattanly: Interactive Q-Q and Manhattan Plots Using 'plotly.js'. R package version 0.3.0, https://cran.r-project.org/web/packages/manhattanly. Accessed 05 Mar. 2026.
Previous versions and publish date:
0.1.0 (2016-06-08 17:52), 0.2.0 (2016-11-16 01:56), 0.3.0 (2021-04-26 08:40)
Other packages that cited manhattanly R package
View manhattanly citation profile
Other R packages that manhattanly depends, imports, suggests or enhances
Complete documentation for manhattanly
Functions, R codes and Examples using the manhattanly R package
Some associated functions: HapMap . manhattanly . manhattanr . qqly . qqr . significantSNP . volcanoly . volcanor . 
Some associated R codes: HapMap-data.R . manhattanly.R . manhattanr.R . qqly.R . qqr.R . significantSNP-data.R . utils.R . volcanoly.R . volcanor.R . zzz.R .  Full manhattanly package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

neat  
Efficient Network Enrichment Analysis Test
Includes functions and examples to compute NEAT, the Network Enrichment Analysis Test described in ...
Download / Learn more Package Citations See dependency  
ClimClass  
Climate Classification According to Several Indices
Classification of climate according to Koeppen - Geiger, of aridity indices, of continentality indi ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
imagefx  
Extract Features from Images
Synthesize images into characteristic features for time-series analysis or machine learning applicat ...
Download / Learn more Package Citations See dependency  
diffIRT  
Diffusion IRT Models for Response and Response Time Data
Package to fit diffusion-based IRT models to response and response time data. Models are fit using ...
Download / Learn more Package Citations See dependency  
pinp  
'pinp' is not 'PNAS'
A 'PNAS'-alike style for 'rmarkdown', derived from the 'Proceedings of the National Academy of Scie ...
Download / Learn more Package Citations See dependency  

26,264

R Packages

223,360

Dependencies

70,244

Author Associations

26,265

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA