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manhattanly  

Interactive Q-Q and Manhattan Plots Using 'plotly.js'
View on CRAN: Click here


Download and install manhattanly package within the R console
Install from CRAN:
install.packages("manhattanly")

Install from Github:
library("remotes")
install_github("cran/manhattanly")

Install by package version:
library("remotes")
install_version("manhattanly", "0.3.0")



Attach the package and use:
library("manhattanly")
Maintained by
Sahir Bhatnagar
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2016-06-08
Latest Update:
Description:
Create interactive manhattan, Q-Q and volcano plots that are usable from the R console, in 'Dash' apps, in the 'RStudio' viewer pane, in 'R Markdown' documents, and in 'Shiny' apps. Hover the mouse pointer over a point to show details or drag a rectangle to zoom. A manhattan plot is a popular graphical method for visualizing results from high-dimensional data analysis such as a (epi)genome wide association study (GWAS or EWAS), in which p-values, Z-scores, test statistics are plotted on a scatter plot against their genomic position. Manhattan plots are used for visualizing potential regions of interest in the genome that are associated with a phenotype. Interactive manhattan plots allow the inspection of specific value (e.g. rs number or gene name) by hovering the mouse over a cell, as well as zooming into a region of the genome (e.g. a chromosome) by dragging a rectangle around the relevant area. This work is based on the 'qqman' package and the 'plotly.js' engine. It produces similar manhattan and Q-Q plots as the 'manhattan' and 'qq' functions in the 'qqman' package, with the advantage of including extra annotation information and interactive web-based visualizations directly from R. Once uploaded to a 'plotly' account, 'plotly' graphs (and the data behind them) can be viewed and modified in a web browser.
How to cite:
Sahir Bhatnagar (2016). manhattanly: Interactive Q-Q and Manhattan Plots Using 'plotly.js'. R package version 0.3.0, https://cran.r-project.org/web/packages/manhattanly. Accessed 05 Jun. 2026.
Previous versions and publish date:
0.1.0 (2016-06-08 17:52), 0.2.0 (2016-11-16 01:56), 0.3.0 (2021-04-26 08:40)
Other packages that cited manhattanly R package
View manhattanly citation profile
Other R packages that manhattanly depends, imports, suggests or enhances
Complete documentation for manhattanly
Functions, R codes and Examples using the manhattanly R package
Some associated functions: HapMap . manhattanly . manhattanr . qqly . qqr . significantSNP . volcanoly . volcanor . 
Some associated R codes: HapMap-data.R . manhattanly.R . manhattanr.R . qqly.R . qqr.R . significantSNP-data.R . utils.R . volcanoly.R . volcanor.R . zzz.R .  Full manhattanly package functions and examples
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