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malan  

MAle Lineage ANalysis
View on CRAN: Click here


Download and install malan package within the R console
Install from CRAN:
install.packages("malan")

Install from Github:
library("remotes")
install_github("cran/malan")

Install by package version:
library("remotes")
install_version("malan", "1.0.3")



Attach the package and use:
library("malan")
Maintained by
Mikkel Meyer Andersen
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-06-25
Latest Update: 2020-06-25
Description:
MAle Lineage ANalysis by simulating genealogies backwards and imposing short tandem repeats (STR) mutations forwards. Intended for forensic Y chromosomal STR (Y-STR) haplotype analyses. Numerous analyses are possible, e.g. number of matches and meiotic distance to matches. Refer to papers mentioned in citation("malan") (DOI's: , and ).
How to cite:
Mikkel Meyer Andersen (2020). malan: MAle Lineage ANalysis. R package version 1.0.3, https://cran.r-project.org/web/packages/malan
Previous versions and publish date:
1.0.2 (2020-06-25 14:00)
Other packages that cited malan R package
View malan citation profile
Other R packages that malan depends, imports, suggests or enhances
Functions, R codes and Examples using the malan R package
Some associated functions: analyse_mixture_result . analyse_mixture_results . as_tbl_graph.malan_pedigreelist . brothers_matching . build_haplotype_hashmap . build_pedigrees . calc_autosomal_genotype_conditional_cumdist . calc_autosomal_genotype_probs . construct_M . count_brothers . count_haplotype_near_matches_individuals . count_haplotype_occurrences_individuals . count_haplotype_occurrences_pedigree . count_uncles . delete_haplotypeids_hashmap . estimate_autotheta_1subpop_genotypes . estimate_autotheta_1subpop_individuals . estimate_autotheta_subpops_genotypes . estimate_autotheta_subpops_individuals . estimate_autotheta_subpops_pids . estimate_autotheta_subpops_unweighted_genotypes . estimate_autotheta_subpops_unweighted_pids . father_matches . from_igraph . from_igraph_rcpp . generate_get_founder_haplotype_db . generate_get_founder_haplotype_ladder . get_allele_counts_genotypes . get_allele_counts_pids . get_brothers . get_children . get_cousins . get_family_info . get_father . get_generation . get_haplotype . get_haplotypes_in_pedigree . get_haplotypes_individuals . get_haplotypes_pids . get_individual . get_individuals . get_matching_pids_from_hashmap . get_nodes_edges . get_pedigree_as_graph . get_pedigree_from_individual . get_pedigree_id . get_pedigree_id_from_pid . get_pedigrees_tidy . get_pid . get_pids_in_pedigree . get_uncles . get_zero_haplotype_generator . grandfather_matches . haplotype_matches_individuals . haplotype_partially_matches_individuals . haplotypes_to_hashes . infer_generation . infer_generations . load_haplotypes . load_individuals . malan-package . meioses_generation_distribution . meiotic_dist . meiotic_dist_threshold . meiotic_radius . mixture_info_by_individuals_2pers . mixture_info_by_individuals_3pers . mixture_info_by_individuals_4pers . mixture_info_by_individuals_5pers . pedigree_as_igraph . pedigree_haplotype_matches_in_pedigree_meiosis_L1_dists . pedigree_haplotype_near_matches_meiosis . pedigree_size . pedigree_size_generation . pedigrees_all_populate_autosomal . pedigrees_all_populate_haplotypes . pedigrees_all_populate_haplotypes_custom_founders . pedigrees_all_populate_haplotypes_ladder_bounded . pedigrees_count . pedigrees_table . plot.malan_pedigree . plot.malan_pedigreelist . population_populate_autosomal_infinite_alleles . population_size_generation . print.malan_pedigree . print.malan_pedigreelist . print.malan_population . print.malan_population_abort . print_individual . relationship_allele_diff_dist . relationship_allele_diff_dist_sym . sample_autosomal_genotype . sample_geneology . sample_geneology_varying_size . set_generation . split_by_haplotypes . sub-sub-.malan_pedigreelist . sub-sub-.malan_population . test_create_population . ystr_kits . ystr_markers . 
Some associated R codes: RcppExports.R . data.R . haplotypes.R . igraph.R . malan-package.R . malan.R . meta.R . print.R . relationship.R .  Full malan package functions and examples
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