R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
macrosyntR
View on CRAN: Click
here
Download and install macrosyntR package within the R console
Install from CRAN:
install.packages("macrosyntR")
Install from Github:
library("remotes")
install_github("cran/macrosyntR") Install by package version:
library("remotes")
install_version("macrosyntR", "0.3.3") Attach the package and use:
library("macrosyntR")
Maintained by
Sami El Hilali
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2023-01-18
Latest Update: 2023-11-14
Description:
Use standard genomics file format (BED) and a table of orthologs to
illustrate synteny conservation at the genome-wide scale.
Significantly conserved linkage groups are identified as described in Simakov et al. (2020)
and displayed on an Oxford Grid (Edwards (1991) ) or a chord diagram as in Simakov et al. (2022) .
The package provides a function that uses a network-based greedy algorithm to find communities (Clauset et al. (2004) )
and so automatically order the chromosomes on the plot to improve interpretability.
How to cite:
Sami El Hilali (2023). macrosyntR: Draw Ordered Oxford Grids and Chord Diagrams. R package version 0.3.3, https://cran.r-project.org/web/packages/macrosyntR. Accessed 04 Jun. 2026.
Other packages that cited macrosyntR R package
View macrosyntR citation profile
Other R packages that macrosyntR depends,
imports, suggests or enhances
Complete documentation for macrosyntR
Functions, R codes and Examples using
the macrosyntR R package
Some associated functions: compute_linkage_groups . compute_macrosynteny . get_syntenic_genes . load_orthologs . plot_chord_diagram . plot_macrosynteny . plot_oxford_grid . reorder_macrosynteny . reorder_multiple_macrosyntenies . reverse_species_order . subset_linkage_orthologs .
Some associated R codes: compute_linkage_groups.R . compute_macrosynteny.R . get_ideograms_coordinates.R . get_syntenic_genes.R . load_orthologs.R . plot_chord_diagram.R . plot_macrosynteny.R . plot_oxford_grid.R . reorder_macrosynteny.R . reorder_multiple_macrosyntenies.R . reverse_species_order.R . subset_linkage_orthologs.R . Full macrosyntR package functions and examples
Downloads during the last 30 days
Today's Hot Picks in Authors and Packages
nextGenShinyApps
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Obinna Obianom (view profile)
shinybusy
Add indicators (spinner, progress bar, gif) in your 'shiny'
applications to show the user that the ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Victor Perrier (view profile)
phers
Use phenotype risk scores based on linked clinical and genetic data
to study Mendelian disease and ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Jake Hughey (view profile)
murphydiagram
Data and code for the paper by Ehm, Gneiting, Jordan and
Krueger ('Of Quantiles and Expectiles: Con ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Fabian Krueger (view profile)
AMPLE
Three Shiny apps are provided that introduce Harvest Control Rules (HCR) for fisheries management.
...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Finlay Scott (view profile)
golem
An opinionated framework for building a production-ready
'Shiny' application. This package contains ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Colin Fay (view profile)
27,268
R Packages
233,548
Dependencies
72,590
Author Associations
27,205
Publication Badges
