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macrosyntR  

Draw Ordered Oxford Grids and Chord Diagrams
View on CRAN: Click here


Download and install macrosyntR package within the R console
Install from CRAN:
install.packages("macrosyntR")

Install from Github:
library("remotes")
install_github("cran/macrosyntR")

Install by package version:
library("remotes")
install_version("macrosyntR", "0.3.3")



Attach the package and use:
library("macrosyntR")
Maintained by
Sami El Hilali
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2023-01-18
Latest Update: 2023-11-14
Description:
Use standard genomics file format (BED) and a table of orthologs to illustrate synteny conservation at the genome-wide scale. Significantly conserved linkage groups are identified as described in Simakov et al. (2020) and displayed on an Oxford Grid (Edwards (1991) ) or a chord diagram as in Simakov et al. (2022) . The package provides a function that uses a network-based greedy algorithm to find communities (Clauset et al. (2004) ) and so automatically order the chromosomes on the plot to improve interpretability.
How to cite:
Sami El Hilali (2023). macrosyntR: Draw Ordered Oxford Grids and Chord Diagrams. R package version 0.3.3, https://cran.r-project.org/web/packages/macrosyntR. Accessed 22 Dec. 2024.
Previous versions and publish date:
0.2.14 (2023-01-18 13:00), 0.2.19 (2023-03-29 15:30)
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