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mSigTools
View on CRAN: Click
here
Download and install mSigTools package within the R console
Install from CRAN:
install.packages("mSigTools")
Install from Github:
library("remotes")
install_github("cran/mSigTools")
Install by package version:
library("remotes")
install_version("mSigTools", "1.0.7")
Attach the package and use:
library("mSigTools")
Maintained by
Steven Rozen
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-08-30
Latest Update: 2023-01-13
Description:
Utility functions for mutational signature analysis
as described in Alexandrov, L. B. (2020)
.
This package provides two groups of functions. One is
for dealing with mutational signature "exposures"
(i.e. the counts of mutations in a sample that are
due to each mutational signature). The other group of
functions is for matching or comparing sets of
mutational signatures. 'mSigTools' stands for
mutational Signature analysis Tools.
How to cite:
Steven Rozen (2022). mSigTools: Mutational Signature Analysis Tools. R package version 1.0.7, https://cran.r-project.org/web/packages/mSigTools
Previous versions and publish date:
1.0.5 (2022-08-30 14:50)
Other packages that cited mSigTools R package
View mSigTools citation profile
Other R packages that mSigTools depends,
imports, suggests or enhances
Functions, R codes and Examples using
the mSigTools R package
Some associated functions: TP_FP_FN_avg_sim . find_best_reconstruction_QP . match_two_sig_sets . optimize_exposure_QP . plot_exposure . plot_exposure_internal . plot_exposure_to_pdf . read_exposure . sig_dist_matrix . sort_exposure . write_exposure .
Some associated R codes: TP_FP_FN_avg_sim.R . exposure_related_functions.R . find_best_reconstruction_QP.R . internal_matches.R . match_two_sig_sets.R . optimize_exposure_QP.R . sig_dist_matrix.R . Full mSigTools package functions and examples
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