Other packages > Find by keyword >

mLLMCelltype  

Cell Type Annotation Using Large Language Models
View on CRAN: Click here


Download and install mLLMCelltype package within the R console
Install from CRAN:
install.packages("mLLMCelltype")

Install from Github:
library("remotes")
install_github("cran/mLLMCelltype")

Install by package version:
library("remotes")
install_version("mLLMCelltype", "1.3.2")



Attach the package and use:
library("mLLMCelltype")
Maintained by
Chen Yang
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2025-09-02
Latest Update: 2025-09-02
Description:
Automated cell type annotation for single-cell RNA sequencing data using consensus predictions from multiple large language models (LLMs). LLMs are artificial intelligence models trained on vast text corpora to understand and generate human-like text. This package integrates with 'Seurat' objects and provides uncertainty quantification for annotations. Supports various LLM providers including 'OpenAI', 'Anthropic', and 'Google'. The package leverages these models through their respective APIs (Application Programming Interfaces) <https://platform.openai.com/docs>, <https://docs.anthropic.com/>, and <https://ai.google.dev/gemini-api/docs>. For details see Yang et al. (2025) <doi:10.1101/2025.04.10.647852>.
How to cite:
Chen Yang (2025). mLLMCelltype: Cell Type Annotation Using Large Language Models. R package version 1.3.2, https://cran.r-project.org/web/packages/mLLMCelltype. Accessed 16 Jul. 2026.
Previous versions and publish date:
(2026-07-09 06:27), 1.3.2 (2025-09-02 22:50), 2.0.0 (2026-02-08 11:50), 2.0.5 (2026-05-11 09:30)
Other packages that cited mLLMCelltype R package
View mLLMCelltype citation profile
Other R packages that mLLMCelltype depends, imports, suggests or enhances
Complete documentation for mLLMCelltype
Functions, R codes and Examples using the mLLMCelltype R package
Full mLLMCelltype package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

stevedata  
Steve's Toy Data for Teaching About a Variety of Methodological, Social, and Political Topics
This is a collection of various kinds of data with broad uses for teaching. My students, and academ ...
Download / Learn more Package Citations See dependency  
bbdetection  
Identification of Bull and Bear States of the Market
Implements two algorithms of detecting Bull and Bear markets in stock prices: the algorithm of Pagan ...
Download / Learn more Package Citations See dependency  
wordnet  
WordNet Interface
An interface to WordNet using the Jawbone Java API to WordNet. WordNet (< ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
tibble  
Simple Data Frames
Provides a 'tbl_df' class (the 'tibble') with stricter checking and better formatting than the tradi ...
Download / Learn more Package Citations See dependency  
Rnmr1D  
Perform the Complete Processing of a Set of Proton Nuclear Magnetic Resonance Spectra
Perform the complete processing of a set of proton nuclear magnetic resonance spectra from the free ...
Download / Learn more Package Citations See dependency  

27,806

R Packages

239,283

Dependencies

73,837

Author Associations

27,807

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA