Other packages > Find by keyword >

mExplorer  

Identifying Master Gene Regulators from Gene Expression and DNA-Binding Data
View on CRAN: Click here


Download and install mExplorer package within the R console
Install from CRAN:
install.packages("mExplorer")

Install from Github:
library("remotes")
install_github("cran/mExplorer")

Install by package version:
library("remotes")
install_version("mExplorer", "1.0.0")



Attach the package and use:
library("mExplorer")
Maintained by
Juri Reimand
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-08-24
Latest Update: 2017-08-24
Description:
The method 'm:Explorer' associates a given list of target genes (e.g. those involved in a biological process) to gene regulators such as transcription factors. Transcription factors that bind DNA near significantly many target genes or correlate with target genes in transcriptional (microarray or RNAseq data) are selected. Selection of candidate master regulators is carried out using multinomial regression models, likelihood ratio tests and multiple testing correction. Reference: m:Explorer: multinomial regression models reveal positive and negative regulators of longevity in yeast quiescence. Juri Reimand, Anu Aun, Jaak Vilo, Juan M Vaquerizas, Juhan Sedman and Nicholas M Luscombe. Genome Biology (2012) 13:R55 .
How to cite:
Juri Reimand (2017). mExplorer: Identifying Master Gene Regulators from Gene Expression and DNA-Binding Data. R package version 1.0.0, https://cran.r-project.org/web/packages/mExplorer. Accessed 06 Mar. 2026.
Previous versions and publish date:
No previous versions
Other packages that cited mExplorer R package
View mExplorer citation profile
Other R packages that mExplorer depends, imports, suggests or enhances
Complete documentation for mExplorer
Functions, R codes and Examples using the mExplorer R package
Some associated functions: mExplorer . prepare_gmt_input . small_test_dframe . small_test_response_vec . yeastCCgenes . yeastTFdata . 
Some associated R codes: mExplorer.R .  Full mExplorer package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

DatabionicSwarm  
Swarm Intelligence for Self-Organized Clustering
Algorithms implementing populations of agents that interact with one another and sense their environ ...
Download / Learn more Package Citations See dependency  
openxlsx  
Read, Write and Edit xlsx Files
Simplifies the creation of Excel .xlsx files by providing a high level interface to writing, stylin ...
Download / Learn more Package Citations See dependency  
EMVS  
The Expectation-Maximization Approach to Bayesian Variable Selection
An efficient expectation-maximization algorithm for fitting Bayesian spike-and-slab regularization p ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
mlr3viz  
Visualizations for 'mlr3'
Visualization package of the 'mlr3' ecosystem. It features plots for mlr3 objects such as tasks, le ...
Download / Learn more Package Citations See dependency  
lbfgs  
Limited-memory BFGS Optimization
A wrapper built around the libLBFGS optimization library by Naoaki Okazaki. The lbfgs package implem ...
Download / Learn more Package Citations See dependency  

26,264

R Packages

223,360

Dependencies

70,376

Author Associations

26,265

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA