Other packages > Find by keyword >

longreadvqs  

Viral Quasispecies Comparison from Long-Read Sequencing Data
View on CRAN: Click here


Download and install longreadvqs package within the R console
Install from CRAN:
install.packages("longreadvqs")

Install from Github:
library("remotes")
install_github("cran/longreadvqs")

Install by package version:
library("remotes")
install_version("longreadvqs", "0.1.5")



Attach the package and use:
library("longreadvqs")
Maintained by
Nakarin Pamornchainavakul
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-04-14
Latest Update: 2024-08-26
Description:
Performs variety of viral quasispecies diversity analyses [see Gregori et al. (2016) ] based on long-read sequence alignment. Main functions include 1) sequencing error minimization and read sampling, 2) Single nucleotide variant (SNV) profiles comparison, and 3) viral quasispecies profiles comparison and visualization.
How to cite:
Nakarin Pamornchainavakul (2024). longreadvqs: Viral Quasispecies Comparison from Long-Read Sequencing Data. R package version 0.1.5, https://cran.r-project.org/web/packages/longreadvqs. Accessed 04 Oct. 2026.
Previous versions and publish date:
(2026-07-09 07:53), 0.1.2 (2024-04-14 21:20), 0.1.3 (2024-08-26 21:30), 0.1.4 (2025-10-20 20:20)
Other packages that cited longreadvqs R package
View longreadvqs citation profile
Other R packages that longreadvqs depends, imports, suggests or enhances
Complete documentation for longreadvqs
Functions, R codes and Examples using the longreadvqs R package
Full longreadvqs package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

plotbb  
Grammar of Graphics for 'base' Plot
Proof of concept for implementing grammar of graphics using base plot. The bbplot() function initial ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
rWishart  
Random Wishart Matrix Generation
An expansion of R's 'stats' random wishart matrix generation. This package allows the user to gener ...
Download / Learn more Package Citations See dependency  
skilljaR  
Connect to Your 'Skilljar' Data
Functions that simplify calls to the 'Skilljar' API. See < ...
Download / Learn more Package Citations See dependency  

28,905

R Packages

247,686

Dependencies

76,495

Author Associations

28,906

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA