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longreadvqs  

Viral Quasispecies Comparison from Long-Read Sequencing Data
View on CRAN: Click here


Download and install longreadvqs package within the R console
Install from CRAN:
install.packages("longreadvqs")

Install from Github:
library("remotes")
install_github("cran/longreadvqs")

Install by package version:
library("remotes")
install_version("longreadvqs", "0.1.4")



Attach the package and use:
library("longreadvqs")
Maintained by
Nakarin Pamornchainavakul
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-04-14
Latest Update: 2024-08-26
Description:
Performs variety of viral quasispecies diversity analyses [see Gregori et al. (2016) ] based on long-read sequence alignment. Main functions include 1) sequencing error minimization and read sampling, 2) Single nucleotide variant (SNV) profiles comparison, and 3) viral quasispecies profiles comparison and visualization.
How to cite:
Nakarin Pamornchainavakul (2024). longreadvqs: Viral Quasispecies Comparison from Long-Read Sequencing Data. R package version 0.1.4, https://cran.r-project.org/web/packages/longreadvqs. Accessed 26 Jun. 2026.
Previous versions and publish date:
0.1.2 (2024-04-14 21:20), 0.1.3 (2024-08-26 21:30), 0.1.4 (2025-10-20 20:20)
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Complete documentation for longreadvqs
Functions, R codes and Examples using the longreadvqs R package
Full longreadvqs package functions and examples
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