Other packages > Find by keyword >

locuszoomr  

Gene Locus Plot with Gene Annotations
View on CRAN: Click here


Download and install locuszoomr package within the R console
Install from CRAN:
install.packages("locuszoomr")

Install from Github:
library("remotes")
install_github("cran/locuszoomr")

Install by package version:
library("remotes")
install_version("locuszoomr", "0.3.7")



Attach the package and use:
library("locuszoomr")
Maintained by
Myles Lewis
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2023-11-01
Latest Update: 2024-02-17
Description:
Publication-ready regional gene locus plots similar to those produced by the web interface 'LocusZoom' , but running locally in R. Genetic or genomic data with gene annotation tracks are plotted via R base graphics, 'ggplot2' or 'plotly', allowing flexibility and easy customisation including laying out multiple locus plots on the same page. It uses the 'LDlink' API to query linkage disequilibrium data from the 1000 Genomes Project and can overlay this on plots.
How to cite:
Myles Lewis (2023). locuszoomr: Gene Locus Plot with Gene Annotations. R package version 0.3.7, https://cran.r-project.org/web/packages/locuszoomr. Accessed 18 Feb. 2025.
Previous versions and publish date:
0.1.1 (2023-11-01 14:10), 0.1.2 (2023-11-02 02:10), 0.1.3 (2023-12-06 05:30), 0.2.0 (2024-01-08 22:40), 0.2.1 (2024-02-17 15:30), 0.3.0 (2024-04-16 23:40), 0.3.1 (2024-07-03 22:40), 0.3.2 (2024-08-19 17:10), 0.3.4 (2024-09-06 12:10), 0.3.5 (2024-09-15 23:50), 0.3.6 (2025-01-26 01:10)
Other packages that cited locuszoomr R package
View locuszoomr citation profile
Other R packages that locuszoomr depends, imports, suggests or enhances
Complete documentation for locuszoomr
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

clustMixType  
k-Prototypes Clustering for Mixed Variable-Type Data
Functions to perform k-prototypes partitioning clustering for mixed variable-type data according to ...
Download / Learn more Package Citations See dependency  
fclust  
Fuzzy Clustering
Algorithms for fuzzy clustering, cluster validity indices and plots for cluster validity and visuali ...
Download / Learn more Package Citations See dependency  
OptGS  
Near-Optimal Group-Sequential Designs for Continuous Outcomes
Optimal group-sequential designs minimise some function of the expected and maximum sample size whil ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
ppmf  
Read Census Privacy Protected Microdata Files
Implements data processing described in to align modern differentially ...
Download / Learn more Package Citations See dependency  
RobustBayesianCopas  
Robust Bayesian Copas Selection Model
Fits the robust Bayesian Copas (RBC) selection model of Bai et al. (2020) for cor ...
Download / Learn more Package Citations See dependency  

23,712

R Packages

205,795

Dependencies

64,332

Author Associations

23,631

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA