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locuszoomr
View on CRAN: Click
here
Download and install locuszoomr package within the R console
Install from CRAN:
install.packages("locuszoomr")
Install from Github:
library("remotes")
install_github("cran/locuszoomr")
Install by package version:
library("remotes")
install_version("locuszoomr", "0.3.5")
Attach the package and use:
library("locuszoomr")
Maintained by
Myles Lewis
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2023-11-01
Latest Update: 2024-02-17
Description:
Publication-ready regional gene locus plots similar to those produced by the web interface 'LocusZoom' , but running locally in R. Genetic or genomic data with gene annotation tracks are plotted via R base graphics, 'ggplot2' or 'plotly', allowing flexibility and easy customisation including laying out multiple locus plots on the same page. It uses the 'LDlink' API to query linkage disequilibrium data from the 1000 Genomes Project and can overlay this on plots.
How to cite:
Myles Lewis (2023). locuszoomr: Gene Locus Plot with Gene Annotations. R package version 0.3.5, https://cran.r-project.org/web/packages/locuszoomr. Accessed 21 Nov. 2024.
Previous versions and publish date:
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View locuszoomr citation profile
Other R packages that locuszoomr depends,
imports, suggests or enhances
Complete documentation for locuszoomr
Functions, R codes and Examples using
the locuszoomr R package
Some associated functions: SLE_gwas_sub . eqtl_plot . genetrack_ly . genetracks . genetracks_grob . gg_addgenes . gg_genetracks . gg_scatter . line_plot . link_LD . link_eqtl . link_recomb . locus . locus_ggplot . locus_plot . locus_plotly . multi_layout . overlay_plot . quick_peak . scatter_plot . scatter_plotly . set_layers .
Some associated R codes: SLE_gwas_sub.R . eqtl_plot.R . genetrack_ly.R . genetracks.R . genetracks_grob.R . gg_addgenes.R . gg_genetracks.R . gg_scatter.R . line_plot.R . link_LD.R . link_eqtl.R . link_recomb.R . locus.R . locus_ggplot.R . locus_plot.R . locus_plotly.R . multi_layout.R . overlay_plot.R . quick_peak.R . scatter_plot.R . scatter_plotly.R . set_layers.R . Full locuszoomr package functions and examples
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