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lilikoi  

Metabolomics Personalized Pathway Analysis Tool
View on CRAN: Click here


Download and install lilikoi package within the R console
Install from CRAN:
install.packages("lilikoi")

Install from Github:
library("remotes")
install_github("cran/lilikoi")

Install by package version:
library("remotes")
install_version("lilikoi", "2.1.1")



Attach the package and use:
library("lilikoi")
Maintained by
Lana Garmire
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-07-30
Latest Update: 2022-10-05
Description:
A comprehensive analysis tool for metabolomics data. It consists a variety of functional modules, including several new modules: a pre-processing module for normalization and imputation, an exploratory data analysis module for dimension reduction and source of variation analysis, a classification module with the new deep-learning method and other machine-learning methods, a prognosis module with cox-PH and neural-network based Cox-nnet methods, and pathway analysis module to visualize the pathway and interpret metabolite-pathway relationships. References: H. Paul Benton Jeff Xia Travers Ching, Xun Zhu, Lana X. Garmire (2018) .
How to cite:
Lana Garmire (2018). lilikoi: Metabolomics Personalized Pathway Analysis Tool. R package version 2.1.1, https://cran.r-project.org/web/packages/lilikoi. Accessed 02 Sep. 2026.
Previous versions and publish date:
(2026-07-09 07:53), 0.1.0 (2018-07-30 13:10), 2.0.1 (2020-08-24 17:50), 2.0.2 (2020-10-03 07:30), 2.0.3 (2020-11-10 16:10), 2.0.4 (2021-01-15 10:40), 2.1.0 (2022-02-22 16:20), 2.1.1 (2022-10-05 21:00)
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Complete documentation for lilikoi
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