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liger
View on CRAN: Click
here
Download and install liger package within the R console
Install from CRAN:
install.packages("liger")
Install from Github:
library("remotes")
install_github("cran/liger")
Install by package version:
library("remotes")
install_version("liger", "2.0.1")
Attach the package and use:
library("liger")
Maintained by
Jean Fan
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[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-06-14
Latest Update: 2021-01-25
Description:
Gene Set Enrichment Analysis (GSEA) is a computational method that determines whether an a priori defined set of genes shows statistically significant, concordant differences between two biological states. The original algorithm is detailed in Subramanian et al. with 'Java' implementations available through the Broad Institute (Subramanian et al. 2005 ). The 'liger' package provides a lightweight R implementation of this enrichment test on a list of values (Fan et al., 2017 ). Given a list of values, such as p-values or log-fold changes derived from differential expression analysis or other analyses comparing biological states, this package enables you to test a priori defined set of genes for enrichment to enable interpretability of highly significant or high fold-change genes.
How to cite:
Jean Fan (2018). liger: Lightweight Iterative Geneset Enrichment. R package version 2.0.1, https://cran.r-project.org/web/packages/liger. Accessed 30 Jan. 2025.
Previous versions and publish date:
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imports, suggests or enhances
Functions, R codes and Examples using
the liger R package
Some associated functions: bulk.gsea . gsea . iterative.bulk.gsea . liger . org.Hs.GO2Symbol.list .
Some associated R codes: RcppExports.R . data.R . functions.R . liger-package.R . Full liger package functions and examples
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