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liger  

Lightweight Iterative Geneset Enrichment
View on CRAN: Click here


Download and install liger package within the R console
Install from CRAN:
install.packages("liger")

Install from Github:
library("remotes")
install_github("cran/liger")

Install by package version:
library("remotes")
install_version("liger", "2.0.1")



Attach the package and use:
library("liger")
Maintained by
Jean Fan
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-06-14
Latest Update: 2021-01-25
Description:
Gene Set Enrichment Analysis (GSEA) is a computational method that determines whether an a priori defined set of genes shows statistically significant, concordant differences between two biological states. The original algorithm is detailed in Subramanian et al. with 'Java' implementations available through the Broad Institute (Subramanian et al. 2005 ). The 'liger' package provides a lightweight R implementation of this enrichment test on a list of values (Fan et al., 2017 ). Given a list of values, such as p-values or log-fold changes derived from differential expression analysis or other analyses comparing biological states, this package enables you to test a priori defined set of genes for enrichment to enable interpretability of highly significant or high fold-change genes.
How to cite:
Jean Fan (2018). liger: Lightweight Iterative Geneset Enrichment. R package version 2.0.1, https://cran.r-project.org/web/packages/liger. Accessed 21 Dec. 2024.
Previous versions and publish date:
0.1 (2018-06-14 20:33), 1.0 (2019-01-03 07:30), 1.1.2 (2020-07-16 17:10), 2.0.1 (2021-01-25 06:50)
Other packages that cited liger R package
View liger citation profile
Other R packages that liger depends, imports, suggests or enhances
Functions, R codes and Examples using the liger R package
Some associated functions: bulk.gsea . gsea . iterative.bulk.gsea . liger . org.Hs.GO2Symbol.list . 
Some associated R codes: RcppExports.R . data.R . functions.R . liger-package.R .  Full liger package functions and examples
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