Other packages > Find by keyword >

liger  

Lightweight Iterative Geneset Enrichment
View on CRAN: Click here


Download and install liger package within the R console
Install from CRAN:
install.packages("liger")

Install from Github:
library("remotes")
install_github("cran/liger")

Install by package version:
library("remotes")
install_version("liger", "2.0.1")



Attach the package and use:
library("liger")
Maintained by
Jean Fan
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-06-14
Latest Update: 2021-01-25
Description:
Gene Set Enrichment Analysis (GSEA) is a computational method that determines whether an a priori defined set of genes shows statistically significant, concordant differences between two biological states. The original algorithm is detailed in Subramanian et al. with 'Java' implementations available through the Broad Institute (Subramanian et al. 2005 ). The 'liger' package provides a lightweight R implementation of this enrichment test on a list of values (Fan et al., 2017 ). Given a list of values, such as p-values or log-fold changes derived from differential expression analysis or other analyses comparing biological states, this package enables you to test a priori defined set of genes for enrichment to enable interpretability of highly significant or high fold-change genes.
How to cite:
Jean Fan (2018). liger: Lightweight Iterative Geneset Enrichment. R package version 2.0.1, https://cran.r-project.org/web/packages/liger. Accessed 01 May. 2025.
Previous versions and publish date:
0.1 (2018-06-14 20:33), 1.0 (2019-01-03 07:30), 1.1.2 (2020-07-16 17:10), 2.0.1 (2021-01-25 06:50)
Other packages that cited liger R package
View liger citation profile
Other R packages that liger depends, imports, suggests or enhances
Functions, R codes and Examples using the liger R package
Some associated functions: bulk.gsea . gsea . iterative.bulk.gsea . liger . org.Hs.GO2Symbol.list . 
Some associated R codes: RcppExports.R . data.R . functions.R . liger-package.R .  Full liger package functions and examples
Downloads during the last 30 days
04/0104/0404/0504/0604/0704/0804/0904/1004/1104/1204/1404/1504/1604/1704/1804/1904/2004/2104/2204/2304/2404/2504/2604/27Downloads for liger123456789TrendBars

Today's Hot Picks in Authors and Packages

pander  
An R 'Pandoc' Writer
Contains some functions catching all messages, 'stdout' and other useful information while evaluati ...
Download / Learn more Package Citations See dependency  
dsm  
Density Surface Modelling of Distance Sampling Data
Density surface modelling of line transect data. A Generalized Additive Model-based approach is use ...
Download / Learn more Package Citations See dependency  
representr  
Create Representative Records After Entity Resolution
An implementation of Kaplan, Betancourt, Steorts (2022) that cre ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
fbar  
An Extensible Approach to Flux Balance Analysis
A toolkit for Flux Balance Analysis and related metabolic modeling techniques. Functions are provid ...
Download / Learn more Package Citations See dependency  
dCUR  
Dimension Reduction with Dynamic CUR
Dynamic CUR (dCUR) boosts the CUR decomposition (Mahoney MW., Drineas P. (2009) ...
Download / Learn more Package Citations See dependency  

24,142

R Packages

207,311

Dependencies

65,176

Author Associations

24,143

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA