R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
liger
View on CRAN: Click
here
Download and install liger package within the R console
Install from CRAN:
install.packages("liger")
Install from Github:
library("remotes")
install_github("cran/liger")
Install by package version:
library("remotes")
install_version("liger", "2.0.1")
Attach the package and use:
library("liger")
Maintained by
Jean Fan
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
First Published: 2018-06-14
Latest Update: 2021-01-25
Description:
Gene Set Enrichment Analysis (GSEA) is a computational method that determines whether an a priori defined set of genes shows statistically significant, concordant differences between two biological states. The original algorithm is detailed in Subramanian et al. with 'Java' implementations available through the Broad Institute (Subramanian et al. 2005 ). The 'liger' package provides a lightweight R implementation of this enrichment test on a list of values (Fan et al., 2017 ). Given a list of values, such as p-values or log-fold changes derived from differential expression analysis or other analyses comparing biological states, this package enables you to test a priori defined set of genes for enrichment to enable interpretability of highly significant or high fold-change genes.
How to cite:
Jean Fan (2018). liger: Lightweight Iterative Geneset Enrichment. R package version 2.0.1, https://cran.r-project.org/web/packages/liger. Accessed 08 Apr. 2025.
Previous versions and publish date:
Other packages that cited liger R package
View liger citation profile
Other R packages that liger depends,
imports, suggests or enhances
Functions, R codes and Examples using
the liger R package
Some associated functions: bulk.gsea . gsea . iterative.bulk.gsea . liger . org.Hs.GO2Symbol.list .
Some associated R codes: RcppExports.R . data.R . functions.R . liger-package.R . Full liger package functions and examples
Downloads during the last 30 days
Today's Hot Picks in Authors and Packages
nextGenShinyApps
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Obinna Obianom (view profile)
seasonalclumped
Compiles a set of functions and dummy data that simplify reconstructions of seasonal temperature
va ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Niels de Winter (view profile)
ssc
Provides a collection of self-labeled techniques for semi-supervised classification. In semi-superv ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Christoph Bergmeir (view profile)
dave
A collection of functions accompanying the book "Data Analysis in Vegetation Ecology". 3rd ed. CABI, ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Otto Wildi (view profile)
icr
Provides functions to compute and plot Krippendorff's inter-coder
reliability coefficient alpha and ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Alexander Staudt (view profile)
sybil
This Systems Biology Package Gelius-Dietrich et. al. 2012 doi10.11861752-0509-7-125 implements algor ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Mayo Roettger (view profile)
24,012
R Packages
207,311
Dependencies
64,867
Author Associations
24,013
Publication Badges
