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lgcp  

Log-Gaussian Cox Process
View on CRAN: Click here


Download and install lgcp package within the R console
Install from CRAN:
install.packages("lgcp")

Install from Github:
library("remotes")
install_github("cran/lgcp")

Install by package version:
library("remotes")
install_version("lgcp", "2.0")



Attach the package and use:
library("lgcp")
Maintained by
Benjamin M. Taylor
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2011-10-02
Latest Update: 2023-10-03
Description:
Spatial and spatio-temporal modelling of point patterns using the log-Gaussian Cox process. Bayesian inference for spatial, spatiotemporal, multivariate and aggregated point processes using Markov chain Monte Carlo. See Benjamin M. Taylor, Tilman M. Davies, Barry S. Rowlingson, Peter J. Diggle (2015) .
How to cite:
Benjamin M. Taylor (2011). lgcp: Log-Gaussian Cox Process. R package version 2.0, https://cran.r-project.org/web/packages/lgcp. Accessed 22 Dec. 2024.
Previous versions and publish date:
0.9-0 (2011-10-02 09:32), 0.9-1 (2011-12-09 16:04), 0.9-2 (2012-03-12 16:36), 0.9-3 (2012-03-26 20:13), 0.9-4-2 (2012-05-30 17:47), 0.9-4 (2012-04-20 13:36), 0.9-5 (2012-06-11 10:54), 0.9-7 (2012-07-20 11:54), 1.0 (2012-11-23 17:54), 1.01 (2013-01-23 11:27), 1.3-1 (2013-06-11 14:29), 1.3-2 (2013-06-14 17:46), 1.3-3 (2014-01-07 17:11), 1.3-4 (2014-03-03 10:39), 1.3-6 (2014-05-09 13:35), 1.3-7 (2015-01-24 12:47), 1.3-8 (2015-02-04 15:53), 1.3-9 (2015-02-25 10:33), 1.3-11 (2015-09-10 12:45), 1.3-13 (2015-11-19 11:26), 1.3-14 (2016-01-11 15:26), 1.3-15 (2016-07-18 17:32), 1.3 (2013-05-31 17:27), 1.4 (2017-04-13 00:28), 1.5 (2018-05-22 14:05), 1.6 (2020-03-06 17:00), 1.7 (2021-03-31 16:50), 1.8-2 (2022-11-22 15:20), 1.8 (2022-05-17 11:20)
Other packages that cited lgcp R package
View lgcp citation profile
Other R packages that lgcp depends, imports, suggests or enhances
Complete documentation for lgcp
Functions, R codes and Examples using the lgcp R package
Some associated functions: BetaParameters . CovFunction.function . CovFunction . CovParameters . CovarianceFct . Cvb . EvaluatePrior . Extract.mstppp . Extract.stppp . GAfinalise.MonteCarloAverage . GAfinalise.nullAverage . GAfinalise . GAinitialise.MonteCarloAverage . GAinitialise.nullAverage . GAinitialise . GAreturnvalue.MonteCarloAverage . GAreturnvalue.nullAverage . GAreturnvalue . GAupdate.MonteCarloAverage . GAupdate.nullAverage . GAupdate . GFfinalise.dump2dir . GFfinalise.nullFunction . GFfinalise . GFinitialise.dump2dir . GFinitialise.nullFunction . GFinitialise . GFreturnvalue.dump2dir . GFreturnvalue.nullFunction . GFreturnvalue . GFupdate.dump2dir . GFupdate.nullFunction . GFupdate . GPdrv . GPdrv2 . GPdrv2_Multitype . GPlist2array . GPrealisation . GammafromY . GaussianPrior . KinhomAverage . LogGaussianPrior . MALAlgcp . MALAlgcpAggregateSpatial.PlusPars . MALAlgcpMultitypeSpatial.PlusPars . MALAlgcpSpatial.PlusPars . MALAlgcpSpatial . MALAlgcpSpatioTemporal.PlusPars . MonteCarloAverage . PriorSpec.list . PriorSpec . RandomFieldsCovFct . SpatialPolygonsDataFrame.stapp . SpikedExponentialCovFct . YfromGamma . add.list . addTemporalCovariates . affine.SpatialPolygonsDataFrame . affine.fromFunction . affine.fromSPDF . affine.fromXYZ . affine.stppp . aggCovInfo.ArealWeightedMean . aggCovInfo.ArealWeightedSum . aggCovInfo.Majority . aggCovInfo . aggregateCovariateInfo . aggregateformulaList . andrieuthomsh . as.SpatialGridDataFrame.fromXYZ . as.SpatialGridDataFrame . as.SpatialPixelsDataFrame.lgcpgrid . as.SpatialPixelsDataFrame . as.array.lgcpgrid . as.fromXYZ.fromFunction . as.fromXYZ . as.im.fromFunction . as.im.fromSPDF . as.im.fromXYZ . as.list.lgcpgrid . as.owin.stapp . as.owinlist.SpatialPolygonsDataFrame . as.owinlist . as.owinlist.stapp . as.ppp.mstppp . as.ppp.stppp . as.stppp . as.stppp.stapp . assigninterp . at . autocorr . autocorrMultitype . betavals . blockcircbase . blockcircbaseFunction . bt.scalar . checkObsWin . chooseCellwidth . circulant.matrix . circulant.numeric . circulant . clearinterp . computeGradtruncSpatial . computeGradtruncSpatioTemporal . condProbs . constantInTime.numeric . constantInTime . constantInTime.stppp . constanth . cov.interp.fft . covEffects . d.func . density.stppp . discreteWindow.lgcpPredict . discreteWindow . dot-onAttach . dump2dir . eigenfrombase . etavals . exceedProbs . exceedProbsAggregated . expectation.lgcpPredict . expectation.lgcpPredictSpatialOnlyPlusParameters . expectation . exponentialCovFct . extendspatialAtRisk . extract.lgcpPredict . extract . fftgrid . fftinterpolate.fromFunction . fftinterpolate.fromSPDF . fftinterpolate.fromXYZ . fftinterpolate . fftmultiply . formulaList . gDisjoint_wg . gIntersects_pg . gOverlay . gTouches_wg . genFFTgrid . getCellCounts . getCounts . getCovParameters.GPrealisation . getCovParameters.list . getCovParameters . getLHSformulaList . getRotation.default . getRotation . getRotation.stppp . getZmat . getZmats . getinterp . getlgcpPredictSpatialINLA . getpolyol . getup . ginhomAverage . grid2spdf . grid2spix . grid2spoly . grid2spts . gridInWindow . gridav.lgcpPredict . gridav . gridfun.lgcpPredict . gridfun . gu . guessinterp . hasNext.iter . hasNext . hvals.lgcpPredict . hvals . identify.lgcpPredict . identifygrid . image.lgcpgrid . initialiseAMCMC.andrieuthomsh . initialiseAMCMC.constanth . initialiseAMCMC . integerise.mstppp . integerise . integerise.stppp . intens.lgcpPredict . intens.lgcpSimMultitypeSpatialPlusParameters . intens.lgcpSimSpatialPlusParameters . intens . interptypes . inversebase . is.SPD . is.burnin . is.pow2 . is.retain . iteration . lambdaEst . lambdaEst.ppp . lambdaEst.stppp . lgcp-package . lgcpForecast . lgcpInits . lgcpPredict . lgcpPredictAggregateSpatialPlusPars . lgcpPredictAggregated . lgcpPredictMultitypeSpatialPlusPars . lgcpPredictSpatial . lgcpPredictSpatialINLA . lgcpPredictSpatialPlusPars . lgcpPredictSpatioTemporalPlusPars . lgcpPrior . lgcpSim . lgcpSimMultitypeSpatialCovariates . lgcpSimSpatial . lgcpSimSpatialCovariates . lgcpbayes . lgcpgrid.array . lgcpgrid.list . lgcpgrid.matrix . lgcpgrid . lgcppars . lgcpvignette . loc2poly . loop.mcmc . ltar . matchcovariance . maternCovFct15 . maternCovFct25 . mcmcLoop . mcmcProgressNone . mcmcProgressPrint . mcmcProgressTextBar . mcmcProgressTk . mcmcpars . mcmctrace.lgcpPredict . mcmctrace . meanfield.lgcpPredict . meanfield.lgcpPredictINLA . meanfield . mstppp.list . mstppp . mstppp.ppp . mstppp.stppp . muEst . multiply.list . neattable . neigh2D . nextStep . nullAverage . nullFunction . numCases . osppp2latlon . osppp2merc . paramprec . paramprecbase . parautocorr . parsummary . plot.fromSPDF . plot.fromXYZ . plot.lgcpAutocorr . plot.lgcpPredict . plot.lgcpQuantiles . plot.lgcpZmat . plot.lgcpgrid . plot.mcmcdiag . plot.mstppp . plot.stppp . plot.temporalAtRisk . plotExceed.array . plotExceed.lgcpPredict . plotExceed . plotit . postcov.lgcpPredictAggregateSpatialPlusParameters . postcov.lgcpPredictMultitypeSpatialPlusParameters . postcov.lgcpPredictSpatialOnlyPlusParameters . postcov.lgcpPredictSpatioTemporalPlusParameters . postcov . print.dump2dir . print.fromFunction . print.fromSPDF . print.fromXYZ . print.gridaverage . print.lgcpPredict . print.lgcpgrid . print.mcmc . print.mstppp . print.stapp . print.stppp . print.temporalAtRisk . priorpost . quantile.lgcpPredict . quantile.lgcpgrid . raster.lgcpgrid . rescale.mstppp . rescale.stppp . resetLoop . rgauss . roteffgain . rotmat . rr.lgcpPredict . rr . samplePosterior . segProbs . seintens.lgcpPredict . seintens . selectObsWindow.default . selectObsWindow . selectObsWindow.stppp . serr.lgcpPredict . serr . setTxtProgressBar2 . setoutput . showGrid.default . showGrid.lgcpPredict . showGrid . showGrid.stppp . smultiply.list . sparsebase . spatialAtRisk.SpatialGridDataFrame . spatialAtRisk.SpatialPolygonsDataFrame . spatialAtRisk.bivden . spatialAtRisk.default . spatialAtRisk.fromXYZ . spatialAtRisk.function . spatialAtRisk.im . spatialAtRisk.lgcpgrid . spatialAtRisk . spatialIntensities.fromSPDF . spatialIntensities.fromXYZ . spatialIntensities . spatialparsEst . stGPrealisation . stapp.SpatialPolygonsDataFrame . stapp.list . stapp . stppp.list . stppp . stppp.ppp . summary.lgcpgrid . summary.mcmc . target.and.grad.AggregateSpatialPlusPars . target.and.grad.MultitypespatialPlusPars . target.and.grad.SpatioTemporalPlusPars . target.and.grad.spatial . target.and.grad.spatialPlusPars . target.and.grad.spatiotemporal . tempRaster . temporalAtRisk.function . temporalAtRisk.numeric . temporalAtRisk . textsummary . thetaEst . toral.cov.mat . touchingowin . traceplots . transblack . transblue . transgreen . transred . txtProgressBar2 . updateAMCMC.andrieuthomsh . updateAMCMC.constanth . updateAMCMC . varfield.lgcpPredict . varfield.lgcpPredictINLA . varfield . window.lgcpPredict . wpopdata . wtowncoords . wtowns . xvals.SpatialGridDataFrame . xvals.default . xvals.fromXYZ . xvals.lgcpPredict . xvals . yvals.SpatialGridDataFrame . yvals.default . yvals.fromXYZ . yvals.lgcpPredict . yvals . zvals.SpatialGridDataFrame . zvals.default . zvals.fromXYZ . zvals . 
Some associated R codes: AggregateSpatialOnlyPlusParameters.R . MultitypeSpatialOnlyPlusParameters.R . SpatialOnlyPlusParameters.R . SpatioTemporalPlusParameters.R . adaptiveSchemes.R . arealMethods.R . computeGradtrunc.R . fftgrid.R . geometryHandling.R . getCounts.R . gridAverageMethods.R . gridFunctionMethods.R . lgcp-INLA.R . lgcp.R . lgcpForecast.R . lgcpInternals.R . lgcpMethods.R . lgcpPredictSpatial.R . lgcpPredictSpatioTemporal.R . lgcpSimSpatioTemporal.R . lgcpStructures.R . lgcppars.R . mcmcIterator.R . mcmcProgress.R . mcmcpars.R . minimumContrast.R . mstpppClassDef.R . parameterEstimation.R . selectObsWindow.R . setoutput.R . spatialAtRiskClassDef.R . spatialOnly.R . stpppClassDef.R . temporalAtRiskClassDef.R . txtProgressBar2.R . zzz.R .  Full lgcp package functions and examples
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