Other packages > Find by keyword >

lfmm  

Latent Factor Mixed Models
View on CRAN: Click here


Download and install lfmm package within the R console
Install from CRAN:
install.packages("lfmm")

Install from Github:
library("remotes")
install_github("cran/lfmm")

Install by package version:
library("remotes")
install_version("lfmm", "1.1")



Attach the package and use:
library("lfmm")
Maintained by
Basile Jumentier
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-06-29
Latest Update: 2021-06-30
Description:
Fast and accurate inference of gene-environment associations (GEA) in genome-wide studies (Caye et al., 2019, ). We developed a least-squares estimation approach for confounder and effect sizes estimation that provides a unique framework for several categories of genomic data, not restricted to genotypes. The speed of the new algorithm is several times faster than the existing GEA approaches, then our previous version of the 'LFMM' program present in the 'LEA' package (Frichot and Francois, 2015, ).
How to cite:
Basile Jumentier (2020). lfmm: Latent Factor Mixed Models. R package version 1.1, https://cran.r-project.org/web/packages/lfmm. Accessed 25 Jun. 2026.
Previous versions and publish date:
1.0 (2020-06-29 14:24)
Other packages that cited lfmm R package
View lfmm citation profile
Other R packages that lfmm depends, imports, suggests or enhances
Complete documentation for lfmm
Functions, R codes and Examples using the lfmm R package
Some associated functions: effect_size . example.data . glm_test . lfmm . lfmm_lasso . lfmm_ridge . lfmm_sampler . lfmm_test . predict_lfmm . skin.exposure . 
Some associated R codes: Dat.R . LfmmDat.R . RcppExports.R . example_data.R . helpers.R . hypothesis-testing.R . io.R . lassoLFMM.R . lfmm.R . matrix-factorizationR.R . ridgeLFMM.R . sampler.R . skin_exposure.R .  Full lfmm package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

edeaR  
Exploratory and Descriptive Event-Based Data Analysis
Exploratory and descriptive analysis of event based data. Provides methods for describing and select ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
sitmo  
Parallel Pseudo Random Number Generator (PPRNG) 'sitmo' Header Files
Provided within are two high quality and fast PPRNGs that may be used in an 'OpenMP' parallel enviro ...
Download / Learn more Package Citations See dependency  
airGRiwrm  
'airGR' Integrated Water Resource Management
Semi-distributed Precipitation-Runoff Modelling based on 'airGR' package models integrating human i ...
Download / Learn more Package Citations See dependency  
foster  
Forest Structure Extrapolation with R
Set of tools to streamline the modeling of the relationship betweensatellite imagery time series or ...
Download / Learn more Package Citations See dependency  

27,535

R Packages

236,180

Dependencies

73,223

Author Associations

27,536

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA