Other packages > Find by keyword >

lfmm  

Latent Factor Mixed Models
View on CRAN: Click here


Download and install lfmm package within the R console
Install from CRAN:
install.packages("lfmm")

Install from Github:
library("remotes")
install_github("cran/lfmm")

Install by package version:
library("remotes")
install_version("lfmm", "1.1")



Attach the package and use:
library("lfmm")
Maintained by
Basile Jumentier
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-06-29
Latest Update: 2021-06-30
Description:
Fast and accurate inference of gene-environment associations (GEA) in genome-wide studies (Caye et al., 2019, ). We developed a least-squares estimation approach for confounder and effect sizes estimation that provides a unique framework for several categories of genomic data, not restricted to genotypes. The speed of the new algorithm is several times faster than the existing GEA approaches, then our previous version of the 'LFMM' program present in the 'LEA' package (Frichot and Francois, 2015, ).
How to cite:
Basile Jumentier (2020). lfmm: Latent Factor Mixed Models. R package version 1.1, https://cran.r-project.org/web/packages/lfmm. Accessed 04 Jun. 2026.
Previous versions and publish date:
1.0 (2020-06-29 14:24)
Other packages that cited lfmm R package
View lfmm citation profile
Other R packages that lfmm depends, imports, suggests or enhances
Complete documentation for lfmm
Functions, R codes and Examples using the lfmm R package
Some associated functions: effect_size . example.data . glm_test . lfmm . lfmm_lasso . lfmm_ridge . lfmm_sampler . lfmm_test . predict_lfmm . skin.exposure . 
Some associated R codes: Dat.R . LfmmDat.R . RcppExports.R . example_data.R . helpers.R . hypothesis-testing.R . io.R . lassoLFMM.R . lfmm.R . matrix-factorizationR.R . ridgeLFMM.R . sampler.R . skin_exposure.R .  Full lfmm package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

murphydiagram  
Murphy Diagrams for Forecast Comparisons
Data and code for the paper by Ehm, Gneiting, Jordan and Krueger ('Of Quantiles and Expectiles: Con ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
crplyr  
A 'dplyr' Interface for Crunch
In order to facilitate analysis of datasets hosted on the Crunch data platform ...
Download / Learn more Package Citations See dependency  
golem  
A Framework for Robust Shiny Applications
An opinionated framework for building a production-ready 'Shiny' application. This package contains ...
Download / Learn more Package Citations See dependency  
AMPLE  
Shiny Apps to Support Capacity Building on Harvest Control Rules
Three Shiny apps are provided that introduce Harvest Control Rules (HCR) for fisheries management. ...
Download / Learn more Package Citations See dependency  
shinybusy  
Busy Indicators and Notifications for 'Shiny' Applications
Add indicators (spinner, progress bar, gif) in your 'shiny' applications to show the user that the ...
Download / Learn more Package Citations See dependency  

27,268

R Packages

233,548

Dependencies

72,590

Author Associations

27,205

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA