Other packages > Find by keyword >

lfmm  

Latent Factor Mixed Models
View on CRAN: Click here


Download and install lfmm package within the R console
Install from CRAN:
install.packages("lfmm")

Install from Github:
library("remotes")
install_github("cran/lfmm")

Install by package version:
library("remotes")
install_version("lfmm", "1.1")



Attach the package and use:
library("lfmm")
Maintained by
Basile Jumentier
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-06-29
Latest Update: 2021-06-30
Description:
Fast and accurate inference of gene-environment associations (GEA) in genome-wide studies (Caye et al., 2019, ). We developed a least-squares estimation approach for confounder and effect sizes estimation that provides a unique framework for several categories of genomic data, not restricted to genotypes. The speed of the new algorithm is several times faster than the existing GEA approaches, then our previous version of the 'LFMM' program present in the 'LEA' package (Frichot and Francois, 2015, ).
How to cite:
Basile Jumentier (2020). lfmm: Latent Factor Mixed Models. R package version 1.1, https://cran.r-project.org/web/packages/lfmm. Accessed 15 Sep. 2026.
Previous versions and publish date:
(2026-07-09 07:52), 1.0 (2020-06-29 14:24)
Other packages that cited lfmm R package
View lfmm citation profile
Other R packages that lfmm depends, imports, suggests or enhances
Complete documentation for lfmm
Functions, R codes and Examples using the lfmm R package
Some associated functions: effect_size . example.data . glm_test . lfmm . lfmm_lasso . lfmm_ridge . lfmm_sampler . lfmm_test . predict_lfmm . skin.exposure . 
Some associated R codes: Dat.R . LfmmDat.R . RcppExports.R . example_data.R . helpers.R . hypothesis-testing.R . io.R . lassoLFMM.R . lfmm.R . matrix-factorizationR.R . ridgeLFMM.R . sampler.R . skin_exposure.R .  Full lfmm package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

objectSignals  
Observer Pattern for S4
A mutable Signal object can report changes to its state, clients could register functions so that t ...
Download / Learn more Package Citations See dependency  
RXshrink  
Maximum Likelihood Shrinkage using Generalized Ridge or Least Angle Regression
Functions are provided to calculate and display ridge TRACE Diagnostics for a variety of alternativ ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
functClust  
Functional Clustering of Redundant Components of a System
Cluster together the components that make up an interactivesystem on the basis of their functional r ...
Download / Learn more Package Citations See dependency  
AFR  
Toolkit for Regression Analysis of Kazakhstan Banking Sector Data
Tool is created for regression, prediction and forecast analysis of macroeconomic and credit data. ...
Download / Learn more Package Citations See dependency  
CTTinShiny  
Shiny Interface for the CTT Package
A Shiny interface developed in close coordination with the CTT package, providing a GUI that guides ...
Download / Learn more Package Citations See dependency  

28,565

R Packages

239,283

Dependencies

75,677

Author Associations

28,566

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA