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landsepi  

Landscape Epidemiology and Evolution
View on CRAN: Click here


Download and install landsepi package within the R console
Install from CRAN:
install.packages("landsepi")

Install from Github:
library("remotes")
install_github("cran/landsepi")

Install by package version:
library("remotes")
install_version("landsepi", "1.5.1")



Attach the package and use:
library("landsepi")
Maintained by
Jean-François Rey
[Scholar Profile | Author Map]
First Published: 2018-03-26
Latest Update: 2023-07-19
Description:
A stochastic, spatially-explicit, demo-genetic model simulating the spread and evolution of a plant pathogen in a heterogeneous landscape to assess resistance deployment strategies. It is based on a spatial geometry for describing the landscape and allocation of different cultivars, a dispersal kernel for the dissemination of the pathogen, and a SEIR ('Susceptible-Exposed-Infectious-Removed
How to cite:
Jean-François Rey (2018). landsepi: Landscape Epidemiology and Evolution. R package version 1.5.1, https://cran.r-project.org/web/packages/landsepi. Accessed 13 May. 2025.
Previous versions and publish date:
0.0.2 (2018-03-26 14:38), 0.0.3 (2018-04-09 14:48), 0.0.4 (2018-04-10 15:35), 0.0.5 (2018-11-27 11:40), 0.0.6 (2019-01-09 13:40), 0.0.7 (2019-01-14 13:50), 0.0.8 (2019-10-05 01:30), 1.0.0 (2020-07-01 16:40), 1.0.1 (2020-07-02 15:10), 1.0.2 (2020-12-01 01:30), 1.1.0 (2021-07-26 18:40), 1.1.1 (2021-10-05 12:30), 1.1.2 (2022-03-02 14:10), 1.2.0 (2022-10-05 13:10), 1.2.1 (2022-10-06 00:50), 1.2.2 (2022-10-06 10:00), 1.2.3 (2023-01-16 14:10), 1.2.4 (2023-01-16 19:20), 1.2.5 (2023-02-27 10:32), 1.3.0 (2023-07-19 11:00), 1.4.0 (2024-03-12 17:50), 1.5.0 (2024-09-03 12:20)
Other packages that cited landsepi R package
View landsepi citation profile
Other R packages that landsepi depends, imports, suggests or enhances
Complete documentation for landsepi
Functions, R codes and Examples using the landsepi R package
Some associated functions: AgriLand . Cultivars_list . LandsepiParams . allocateCroptypeCultivars . allocateCultivarGenes . allocateLandscapeCroptypes . antideriv_verhulst . checkCroptypes . checkCultivars . checkCultivarsGenes . checkDispersalHost . checkDispersalPathogen . checkGenes . checkInoculum . checkLandscape . checkOutputs . checkPathogen . checkSimulParams . checkTime . checkTreatment . compute_audpc100S . createSimulParams . demo_landsepi . dispP . epid_output . evol_output . initialize-methods . invlogit . is.in.01 . is.positive . is.strict.positive . is.wholenumber . landscapeTEST . landsepi-package . loadCroptypes . loadCultivar . loadDispersalHost . loadDispersalPathogen . loadGene . loadLandscape . loadOutputs . loadPathogen . loadSimulParams . loadTreatment . logit . model_landsepi . multiN . periodic_cov . plot_allocation . plot_freqPatho . plotland . price_reduction . print-methods . resetCultivarsGenes . runShinyApp . runSimul . saveDeploymentStrategy . setCroptypes . setCultivars . setDispersalHost . setDispersalPathogen . setGenes . setInoculum . setLansdcape . setOutputs . setPathogen . setReproSexProb . setSeed . setSeedValue . setTime . setTreatment . show-methods . simul_landsepi . summary-methods . switch_patho_to_aggr . video . 
Some associated R codes: AgriLand.R . Class-LandsepiParams.R . Cultivars_List.R . GPKGTools.R . Math-Functions.R . Methods-LandsepiParams.R . RcppExports.R . demo_landsepi.R . graphics.R . landsepi.R . output.R . runShiny.R . simul_landsepi.R . tools.R .  Full landsepi package functions and examples
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