Other packages > Find by keyword >

l1kdeconv  

Deconvolution for LINCS L1000 Data
View on CRAN: Click here


Download and install l1kdeconv package within the R console
Install from CRAN:
install.packages("l1kdeconv")

Install from Github:
library("remotes")
install_github("cran/l1kdeconv")

Install by package version:
library("remotes")
install_version("l1kdeconv", "1.2.0")



Attach the package and use:
library("l1kdeconv")
Maintained by
Zhao Li
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-04-18
Latest Update: 2017-07-08
Description:
LINCS L1000 is a high-throughput technology that allows the gene expression measurement in a large number of assays. However, to fit the measurements of ~1000 genes in the ~500 color channels of LINCS L1000, every two landmark genes are designed to share a single channel. Thus, a deconvolution step is required to infer the expression values of each gene. Any errors in this step can be propagated adversely to the downstream analyses. We present a LINCS L1000 data peak calling R package l1kdeconv based on a new outlier detection method and an aggregate Gaussian mixture model. Upon the remove of outliers and the borrowing information among similar samples, l1kdeconv shows more stable and better performance than methods commonly used in LINCS L1000 data deconvolution.
How to cite:
Zhao Li (2017). l1kdeconv: Deconvolution for LINCS L1000 Data. R package version 1.2.0, https://cran.r-project.org/web/packages/l1kdeconv. Accessed 23 Jul. 2026.
Previous versions and publish date:
(2026-07-09 07:51), 1.1.0 (2017-04-18 01:00)
Other packages that cited l1kdeconv R package
View l1kdeconv citation profile
Other R packages that l1kdeconv depends, imports, suggests or enhances
Complete documentation for l1kdeconv
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

gfcanalysis  
Tools for Working with Hansen et al. Global Forest Change Dataset
Supports analyses using the Global Forest Change dataset released by Hansen et al. gfcanalysis was ...
Download / Learn more Package Citations See dependency  
ODS  
Statistical Methods for Outcome-Dependent Sampling Designs
Outcome-dependent sampling (ODS) schemes are cost-effective ways to enhance study efficiency. In OD ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
MixSIAR  
Bayesian Mixing Models in R
Creates and runs Bayesian mixing models to analyze biological tracer data (i.e. stable isotopes, fa ...
Download / Learn more Package Citations See dependency  
fitscape  
Classes for Fitness Landscapes and Seascapes
Convenient classes to model fitness landscapes and fitness seascapes. A low-level package with whic ...
Download / Learn more Package Citations See dependency  

27,889

R Packages

239,283

Dependencies

74,019

Author Associations

27,890

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA