Other packages > Find by keyword >

l1kdeconv  

Deconvolution for LINCS L1000 Data
View on CRAN: Click here


Download and install l1kdeconv package within the R console
Install from CRAN:
install.packages("l1kdeconv")

Install from Github:
library("remotes")
install_github("cran/l1kdeconv")

Install by package version:
library("remotes")
install_version("l1kdeconv", "1.2.0")



Attach the package and use:
library("l1kdeconv")
Maintained by
Zhao Li
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-04-18
Latest Update: 2017-07-08
Description:
LINCS L1000 is a high-throughput technology that allows the gene expression measurement in a large number of assays. However, to fit the measurements of ~1000 genes in the ~500 color channels of LINCS L1000, every two landmark genes are designed to share a single channel. Thus, a deconvolution step is required to infer the expression values of each gene. Any errors in this step can be propagated adversely to the downstream analyses. We present a LINCS L1000 data peak calling R package l1kdeconv based on a new outlier detection method and an aggregate Gaussian mixture model. Upon the remove of outliers and the borrowing information among similar samples, l1kdeconv shows more stable and better performance than methods commonly used in LINCS L1000 data deconvolution.
How to cite:
Zhao Li (2017). l1kdeconv: Deconvolution for LINCS L1000 Data. R package version 1.2.0, https://cran.r-project.org/web/packages/l1kdeconv. Accessed 12 Jun. 2026.
Previous versions and publish date:
1.1.0 (2017-04-18 01:00)
Other packages that cited l1kdeconv R package
View l1kdeconv citation profile
Other R packages that l1kdeconv depends, imports, suggests or enhances
Complete documentation for l1kdeconv
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

piwikproR  
Access 'Piwik Pro' Website Statistics
Run Queries against the API of 'Piwik Pro' ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
MEDITS  
Analysis of MEDITS-Like Survey Data
Set of functions working with survey data in the format of the MEDITS project ...
Download / Learn more Package Citations See dependency  
tablerDash  
'Tabler' API for 'Shiny'
'R' interface to the 'Tabler' HTML template. See more here < ...
Download / Learn more Package Citations See dependency  
bfp  
Bayesian Fractional Polynomials
Implements the Bayesian paradigm for fractional polynomial models under the assumption of normally ...
Download / Learn more Package Citations See dependency  

27,372

R Packages

233,548

Dependencies

72,820

Author Associations

27,205

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA