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kmeRs  

K-Mers Similarity Score Matrix and HeatMap
View on CRAN: Click here


Download and install kmeRs package within the R console
Install from CRAN:
install.packages("kmeRs")

Install from Github:
library("remotes")
install_github("cran/kmeRs")

Install by package version:
library("remotes")
install_version("kmeRs", "2.1.0")



Attach the package and use:
library("kmeRs")
Maintained by
Rafal Urniaz
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-11-03
Latest Update: 2024-07-17
Description:
Similarity Score Matrix and HeatMap for nucleic and amino acid k-mers. Similarity score is evaluated by Point Accepted Mutation (PAM) and BLOcks SUbstitution Matrix (BLOSUM). The 30, 40, 70, 120, 250 and 62, 45, 50, 62, 80, 100 matrix versions are available for PAM and BLOSUM, respectively. Alignment is evaluated by local and global alignment.
How to cite:
Rafal Urniaz (2018). kmeRs: K-Mers Similarity Score Matrix and HeatMap. R package version 2.1.0, https://cran.r-project.org/web/packages/kmeRs. Accessed 13 Nov. 2024.
Previous versions and publish date:
1.1.0 (2018-11-03 17:00)
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Complete documentation for kmeRs
Functions, R codes and Examples using the kmeRs R package
Full kmeRs package functions and examples
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